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comparison complementBed.xml @ 26:95a3b2c25bd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:46 -0400
parents e36671a0f646
children 4f7a5ccd2ae9
comparison
equal deleted inserted replaced
25:e36671a0f646 26:95a3b2c25bd1
12 -g @GENOME_FILE@ 12 -g @GENOME_FILE@
13 > "$output" 13 > "$output"
14 ]]> 14 ]]>
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> 17 <param format="@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
18 <expand macro="input_conditional_genome_file" /> 18 <expand macro="input_conditional_genome_file" />
19 </inputs> 19 </inputs>
20 <outputs> 20 <outputs>
21 <data format_source="input" name="output" metadata_source="input" label="Complement of ${input.name}"/> 21 <data format_source="input" name="output" metadata_source="input" label="Complement of ${input.name}"/>
22 </outputs> 22 </outputs>
30 </tests> 30 </tests>
31 <help> 31 <help>
32 <![CDATA[ 32 <![CDATA[
33 **What it does** 33 **What it does**
34 34
35 bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file. 35 bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input @STD_BEDTOOLS_INPUT_LABEL@ file.
36 36
37 .. image:: $PATH_TO_IMAGES/complement-glyph.png 37 .. image:: $PATH_TO_IMAGES/complement-glyph.png
38 38
39 @REFERENCES@ 39 @REFERENCES@
40 ]]> 40 ]]>