Mercurial > repos > iuc > bedtools

comparison mapBed.xml @ 26:95a3b2c25bd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:46 -0400
parents a8eabd2838f6
children e19bebe96cd2
comparison
equal deleted inserted replaced
25:e36671a0f646 26:95a3b2c25bd1
19 @GENOME_FILE_MAPBED@ 19 @GENOME_FILE_MAPBED@
20 > "${output}" 20 > "${output}"
21 ]]> 21 ]]>
22 </command> 22 </command>
23 <inputs> 23 <inputs>
24 <param format="bam,bed,vcf,gff,gff3" name="inputA" type="data" label="File A (BAM/BED/VCF/GFF)" /> 24 <param format="bam,@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="File A (BAM/@STD_BEDTOOLS_INPUT_LABEL@)" />
25 <param format="bam,bed,gff,vcf,gff3" name="inputB" type="data" label="File B (BAM/BED/VCF/GFF)" /> 25 <param format="bam,@STD_BEDTOOLS_INPUTS@" name="inputB" type="data" label="File B (BAM/@STD_BEDTOOLS_INPUT_LABEL@)" />
26 <expand macro="overlap" /> 26 <expand macro="overlap" />
27 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue="" 27 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue=""
28 label="Require reciprocal overlap" 28 label="Require reciprocal overlap"
29 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> 29 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" />
30 <expand macro="strand2" /> 30 <expand macro="strand2" />