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comparison subtractBed.xml @ 26:95a3b2c25bd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:46 -0400
parents 7308cc546a36
children 4f7a5ccd2ae9
comparison
equal deleted inserted replaced
25:e36671a0f646 26:95a3b2c25bd1
15 $removeIfOverlap 15 $removeIfOverlap
16 > '$output' 16 > '$output'
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 20 <param format="@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
21 <param format="bed,gff,vcf,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/> 21 <param format="@STD_BEDTOOLS_INPUTS@" name="inputB" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
22 <expand macro="strand2" /> 22 <expand macro="strand2" />
23 <expand macro="overlap" /> 23 <expand macro="overlap" />
24 <param name="removeIfOverlap" type="select" label="Calculation based on strandedness?"> 24 <param name="removeIfOverlap" type="select" label="Calculation based on strandedness?">
25 <option value="" selected="True">Dont Remove entire feature on overlap</option> 25 <option value="" selected="True">Dont Remove entire feature on overlap</option>
26 <option value="-A">Remove entire feature if any overlap. That is, by default, only subtract the portion of A that overlaps B. Here, if any overlap is found (or -f amount), the entire feature is removed</option> 26 <option value="-A">Remove entire feature if any overlap. That is, by default, only subtract the portion of A that overlaps B. Here, if any overlap is found (or -f amount), the entire feature is removed</option>