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comparison closestBed.xml @ 6:d25966c8ddeb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6ce9a5a91d803b9ac9e743d9721ff0ccd2a5a59f-dirty
author iuc
date Sun, 22 May 2016 12:33:32 -0400
parents f8b7dc21b4ee
children 7308cc546a36
comparison
equal deleted inserted replaced
5:f8b7dc21b4ee 6:d25966c8ddeb
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 #set inputBs = ' '.join( [ str( $file ) for $file in $inputB ] ) 10 #set inputBs = "' '".join([str( $file ) for $file in $inputB])
11 11
12 closestBed 12 closestBed
13 $strand 13 $strand
14 $addition 14 $addition
15 #if $addition2.addition2_select: 15 #if $addition2.addition2_select:
21 -mdb $mdb 21 -mdb $mdb
22 -t $ties 22 -t $ties
23 #if $k: 23 #if $k:
24 -k $k 24 -k $k
25 #end if 25 #end if
26 -a $inputA 26 -a '$inputA'
27 -b $inputBs 27 -b '$inputBs'
28 > $output 28 > $output
29 ]]> 29 ]]>
30 </command> 30 </command>
31 <inputs> 31 <inputs>
32 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 32 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>