Mercurial > repos > iuc > bedtools

comparison flankBed.xml @ 30:db1841942d2b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b67e138b17f7e8cb34f59bed0925f691ec9740f3
author iuc
date Fri, 17 Aug 2018 05:42:39 -0400
parents 95a3b2c25bd1
children 4f7a5ccd2ae9
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29:6bb3cd018203 30:db1841942d2b
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64 .. image:: $PATH_TO_IMAGES/flank-glyph.png 64 .. image:: $PATH_TO_IMAGES/flank-glyph.png
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66 .. class:: warningmark 66 .. class:: warningmark
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68 In order to prevent creating intervals that violate chromosome boundaries, bedtools flank requires a genome file defining the length of each chromosome or contig. 68 In order to prevent creating intervals that violate chromosome boundaries, bedTools flank requires a bedTool genome file defining the length of each chromosome or contig. . This should be a two column tabular file with the chromosome name in the first column and the END coordinate of the chromosome in the second column.
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70 If you need this data for any genome that is at UCSC (http://genome.ucsc.edu), it can be extracted from the Table Browser with the "Get Data: UCSC Main" tool. Set "group" to "All Tables", "table" to "chromInfo", and "output format" to "all fields from selected table".
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70 @REFERENCES@ 74 @REFERENCES@
71 ]]> 75 ]]>
72 </help> 76 </help>
73 <expand macro="citations" /> 77 <expand macro="citations" />