Mercurial > repos > iuc > bedtools

comparison bedpeToBam.xml @ 46:64e2edfe7a2c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 3e7bf5ae62de3520635d75e3825701960b9722e4
author iuc
date Sat, 18 May 2024 23:28:38 +0000
parents 07e8b80f278c
children
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45:a1a923cd89e8 46:64e2edfe7a2c
1 <tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
2 <description>converter</description> 2 <description>converter</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
7 <!-- bedtobam broken in 2.29.0 <expand macro="requirements" /> --> 7 <!-- bedtobam broken in 2.29.0 <expand macro="requirements" /> -->
8 <requirements> 8 <requirements>
9 <requirement type="package" version="2.27.1">bedtools</requirement> 9 <requirement type="package" version="2.31.1">bedtools</requirement>
10 </requirements> 10 </requirements>
11 <expand macro="stdio" /> 11 <expand macro="stdio" />
12 <command><![CDATA[ 12 <command><![CDATA[
13 bedtools bedpetobam 13 bedtools bedpetobam
14 -mapq $mapq 14 -mapq $mapq