Mercurial > repos > iuc > bedtools
diff mapBed.xml @ 3:2cd7e321d259 draft
Uploaded
| author | iuc |
|---|---|
| date | Wed, 27 May 2015 12:54:35 -0400 |
| parents | 457b09031d57 |
| children | 607c0576c6ab |
line wrap: on
line diff
--- a/mapBed.xml Tue May 19 07:05:36 2015 -0400 +++ b/mapBed.xml Wed May 27 12:54:35 2015 -0400 @@ -30,7 +30,9 @@ label="Require reciprocal overlap" help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> <expand macro="strand2" /> - <expand macro="c_and_o_argument" /> + <expand macro="c_and_o_argument"> + <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" /> + </expand> <expand macro="split" /> <expand macro="print_header" /> <conditional name="genome"> @@ -49,7 +51,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="mean" /> </repeat> <output name="output" file="mapBed_result1.bed" ftype="bed" /> @@ -67,7 +69,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="collapse" /> </repeat> <param name="strand" value="-S" /> @@ -77,7 +79,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="collapse" /> </repeat> <param name="strand" value="-s" />