Mercurial > repos > iuc > bedtools

diff complementBed.xml @ 17:44867b59dbf2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit cf7a3674bc833bbd5fdd2ad02e724935ffc7a174
author iuc
date Tue, 05 Sep 2017 15:40:14 -0400
parents 607c0576c6ab
children a8eabd2838f6
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line diff
--- a/complementBed.xml	Fri Aug 18 15:33:08 2017 -0400
+++ b/complementBed.xml	Tue Sep 05 15:40:14 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0">
+<tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.1">
     <description>Extract intervals not represented by an interval file</description>
     <macros>
         <import>macros.xml</import>
@@ -9,13 +9,13 @@
 <![CDATA[
         complementBed
         -i "$input"
-        -g "$genome"
+        -g @GENOME_FILE@
         > "$output"
 ]]>
     </command>
     <inputs>
         <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
-        <expand macro="genome" />
+        <expand macro="input_conditional_genome_file" />
     </inputs>
     <outputs>
         <data format_source="input" name="output" metadata_source="input" label="Complemen of ${input.name}"/>
@@ -23,6 +23,7 @@
     <tests>
         <test>
             <param name="input" value="a.bed" ftype="bed" />
+            <param name="genome_file_opts_selector" value="hist" />
             <param name="genome" value="mm9_chr1.len" />
             <output name="output" file="complementBed_result1.bed" ftype="bed" />
         </test>