Mercurial > repos > iuc > bedtools
diff flankBed.xml @ 17:44867b59dbf2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit cf7a3674bc833bbd5fdd2ad02e724935ffc7a174
| author | iuc |
|---|---|
| date | Tue, 05 Sep 2017 15:40:14 -0400 |
| parents | 7308cc546a36 |
| children | a8eabd2838f6 |
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--- a/flankBed.xml Fri Aug 18 15:33:08 2017 -0400 +++ b/flankBed.xml Tue Sep 05 15:40:14 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="bedtools_flankbed" name="FlankBed" version="@WRAPPER_VERSION@.0"> +<tool id="bedtools_flankbed" name="FlankBed" version="@WRAPPER_VERSION@.1"> <description>create new intervals from the flanks of existing intervals</description> <macros> <import>macros.xml</import> @@ -10,7 +10,7 @@ flankBed $pct $strand - -g $genome + -g @GENOME_FILE@ -i '$input' #if $addition.addition_select == 'b': @@ -24,7 +24,7 @@ </command> <inputs> <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> - <expand macro="genome" /> + <expand macro="input_conditional_genome_file" /> <param name="pct" type="boolean" checked="false" truevalue="-pct" falsevalue="" label="Define -l and -r as a fraction of the feature’s length" help="E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstream”. (-pct)" /> @@ -39,6 +39,7 @@ <tests> <test> <param name="input" value="a.bed" ftype="bed" /> + <param name="genome_file_opts_selector" value="hist" /> <param name="genome" value="mm9_chr1.len"/> <param name="addition_select" value="b"/> <param name="b" value="5"/> @@ -46,6 +47,7 @@ </test> <test> <param name="input" value="a.bed" ftype="bed" /> + <param name="genome_file_opts_selector" value="hist" /> <param name="genome" value="mm9_chr1.len"/> <param name="addition_select" value="lr"/> <param name="l" value="2"/>