Mercurial > repos > iuc > bedtools

diff randomBed.xml @ 17:44867b59dbf2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit cf7a3674bc833bbd5fdd2ad02e724935ffc7a174
author iuc
date Tue, 05 Sep 2017 15:40:14 -0400
parents 607c0576c6ab
children a8eabd2838f6
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--- a/randomBed.xml	Fri Aug 18 15:33:08 2017 -0400
+++ b/randomBed.xml	Tue Sep 05 15:40:14 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0">
+<tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.1">
     <description>generate random intervals in a genome</description>
     <macros>
         <import>macros.xml</import>
@@ -8,7 +8,7 @@
     <command>
 <![CDATA[
         bedtools random
-        -g $genome
+        -g @GENOME_FILE@
         -l $length
         -n $intervals
         #if str($seed.seed_choose) == "True":
@@ -18,7 +18,7 @@
 ]]>
     </command>
     <inputs>
-        <expand macro="genome" />
+        <expand macro="input_conditional_genome_file" />
         <param name="length" type="integer" value="100" label="The length of the intervals to generate" help="(-l)" />
         <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate" help="(-n)" />
         <expand macro="seed" />
@@ -28,6 +28,7 @@
     </outputs>
     <tests>
         <test>
+            <param name="genome_file_opts_selector" value="hist" />
             <param name="genome" value="mm9_chr1.len" />
             <param name="seed_choose" value="False" />
             <param name="length" value="5" />