diff randomBed.xml @ 2:457b09031d57 draft

Uploaded
author iuc
date Tue, 19 May 2015 07:05:36 -0400
parents 82aac94b06c3
children 607c0576c6ab
line wrap: on
line diff
--- a/randomBed.xml	Thu Jan 08 14:25:51 2015 -0500
+++ b/randomBed.xml	Tue May 19 07:05:36 2015 -0400
@@ -11,7 +11,7 @@
         -g $genome
         -l $length
         -n $intervals
-        #if $seed.seed_choose:
+        #if str($seed.seed_choose) == "True":
             -seed $seed.seed
         #end if
         > "$output"
@@ -29,11 +29,15 @@
     <tests>
         <test>
             <param name="genome" value="mm9_chr1.len" />
-            <param name="seed_choose" value="True" />
-            <param name="seed" value="1" />
+            <param name="seed_choose" value="False" />
             <param name="length" value="5" />
             <param name="intervals" value="3" />
-            <output name="output" file="randomBed_result1.bed" ftype="bed" />
+            <output name="output">
+                <assert_contents>
+                    <has_text_matching expression="chr1" />
+                    <has_n_columns n="6" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>