Mercurial > repos > iuc > bedtools

diff macros.xml @ 4:607c0576c6ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
author iuc
date Wed, 27 Jan 2016 15:15:59 -0500
parents 2cd7e321d259
children 7308cc546a36
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line diff
--- a/macros.xml	Wed May 27 12:54:35 2015 -0400
+++ b/macros.xml	Wed Jan 27 15:15:59 2016 -0500
@@ -1,11 +1,11 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.22">bedtools</requirement>
+            <requirement type="package" version="2.24">bedtools</requirement>
             <yield/>
         </requirements>
     </xml>
-    <token name="@WRAPPER_VERSION@">2.22</token>
+    <token name="@WRAPPER_VERSION@">2.24</token>
     <xml name="stdio">
         <stdio>
             <!-- Anything other than zero is an error -->
@@ -53,6 +53,23 @@
         <param format="tabular" name="genome" type="data" label="Genome file" />
         <!--TODO: make use of: ${chromInfo} -->
     </xml>
+    <xml name="closest_D_option">
+        <param name="iu" type="boolean" checked="false" truevalue="-iu" falsevalue=""
+            label="Ignore features in B that are upstream of features in A" 
+            help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-iu)" />
+
+        <param name="id" type="boolean" checked="false" truevalue="-id" falsevalue=""
+            label="Ignore features in B that are downstream of features in A" 
+            help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-id)" />
+
+        <param name="fu" type="boolean" checked="false" truevalue="-fu" falsevalue=""
+            label="Choose first from features in B that are upstream of features in A" 
+            help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-fu)" />
+
+        <param name="fd" type="boolean" checked="false" truevalue="-fd" falsevalue=""
+            label="Choose first from features in B that are downstream of features in A" 
+            help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-fd)" />
+    </xml>
     <xml name="addition">
         <conditional name="addition">
             <param name="addition_select" type="select" label="Choose what you want to do">