Mercurial > repos > iuc > bedtools

diff flankBed.xml @ 41:7ab85ac5f64b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"
author iuc
date Thu, 04 Nov 2021 11:36:55 +0000
parents 3e38c9b3214f
children 07e8b80f278c
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line diff
--- a/flankBed.xml	Thu Sep 09 13:04:07 2021 +0000
+++ b/flankBed.xml	Thu Nov 04 11:36:55 2021 +0000
@@ -1,9 +1,9 @@
 <tool id="bedtools_flankbed" name="bedtools FlankBed" version="@TOOL_VERSION@" profile="@PROFILE@">
     <description>create new intervals from the flanks of existing intervals</description>
-    <expand macro="bio_tools" />
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools" />
     <expand macro="requirements" />
     <expand macro="stdio" />
     <command><![CDATA[
@@ -39,7 +39,7 @@
         <test>
             <param name="input" value="a.bed" ftype="bed" />
             <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="mm9_chr1.len"/>
+            <param name="genome" value="mm9_chr1.len" ftype="tabular"/>
             <param name="addition_select" value="b"/>
             <param name="b" value="5"/>
             <output name="output" file="flankBed_result1.bed" ftype="bed" />
@@ -47,7 +47,7 @@
         <test>
             <param name="input" value="a.bed" ftype="bed" />
             <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="mm9_chr1.len"/>
+            <param name="genome" value="mm9_chr1.len" ftype="tabular"/>
             <param name="addition_select" value="lr"/>
             <param name="l" value="2"/>
             <param name="r" value="3"/>