Mercurial > repos > iuc > bedtools
diff maskFastaBed.xml @ 33:87ee588b3d45 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 0a8cabcc8f00014789b6d30e90be1b949d4e94d2
| author | iuc |
|---|---|
| date | Mon, 17 Dec 2018 14:23:31 -0500 |
| parents | 4f7a5ccd2ae9 |
| children | dde39ba9c031 |
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--- a/maskFastaBed.xml Tue Dec 11 14:01:26 2018 -0500 +++ b/maskFastaBed.xml Mon Dec 17 14:23:31 2018 -0500 @@ -25,7 +25,7 @@ <param name="mc" type="text" value="N" label="Replace masking character" help="That is, instead of masking with Ns, use another character. (-mc)" /> - <param argument="-fullheader" type="boolean" truevalue="-fullheader" falsevalue="" + <param argument="-fullHeader" name="fullheader" type="boolean" truevalue="-fullHeader" falsevalue="" label="Use full fasta header." help="By default, only the word before the first space or tab is used"/> </inputs> @@ -37,13 +37,20 @@ <param name="input" value="nucBed1.bed" ftype="bed" /> <param name="fasta" value="nucBed1.fasta" ftype="fasta" /> <param name="soft" value="False" /> - <output name="output" file="maskFastaBed_result1.bed" ftype="fasta" /> + <output name="output" file="maskFastaBed_result1.fasta" ftype="fasta" /> </test> <test> <param name="input" value="nucBed1.bed" ftype="bed" /> <param name="fasta" value="nucBed1.fasta" ftype="fasta" /> <param name="soft" value="True" /> - <output name="output" file="maskFastaBed_result2.bed" ftype="fasta" /> + <output name="output" file="maskFastaBed_result2.fasta" ftype="fasta" /> + </test> + <test> + <param name="input" value="nucBed1.bed" ftype="bed" /> + <param name="fasta" value="nucBed1.fasta" ftype="fasta" /> + <param name="soft" value="True" /> + <param name="fullheader" value="True" /> + <output name="output" file="maskFastaBed_result3.fasta" ftype="fasta" /> </test> </tests> <help>