Mercurial > repos > iuc > bedtools
diff Bed12ToBed6.xml @ 0:b8348686a0b9 draft
Imported from capsule None
author | iuc |
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date | Tue, 04 Nov 2014 01:45:04 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Bed12ToBed6.xml Tue Nov 04 01:45:04 2014 -0500 @@ -0,0 +1,28 @@ +<tool id="bedtools_bed12tobed6" name="Convert from BED12 to BED6" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <expand macro="stdio" /> + <command> + bed12ToBed16 + -i '$input' + > '$output' + </command> + <inputs> + <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/> + </inputs> + <outputs> + <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/> + </outputs> + <help> + +**What it does** + +bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon). + +@REFERENCES@ + </help> + <expand macro="citations" /> +</tool>