Mercurial > repos > iuc > bedtools

diff coverageBed.xml @ 47:2892111d91f8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:40:09 +0000
parents 64e2edfe7a2c
children
line wrap: on
line diff
--- a/coverageBed.xml	Sat May 18 23:28:38 2024 +0000
+++ b/coverageBed.xml	Fri Feb 21 21:40:09 2025 +0000
@@ -72,50 +72,50 @@
     <tests>
         <test>
             <param name="inputA" value="coverageBedA.bed" ftype="bed"/>
-            <param name="inputB" value="coverageBedB.bed" ftype="bed"/>
+            <param name="reduce_or_iterate|inputB" value="coverageBedB.bed" ftype="bed"/>
             <output name="output" file="coverageBed_result1.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="multiCov1.bed" ftype="bed"/>
-            <param name="inputB" value="srma_in3.bam" ftype="bam"/>
+            <param name="reduce_or_iterate|inputB" value="srma_in3.bam" ftype="bam"/>
             <param name="sorted" value="true"/>
             <output name="output" file="multicov1_by_srma_in3.cov.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="multiCov1.bed" ftype="bed"/>
-            <param name="reduce_or_iterate_selector" value="reduce"/>
-            <param name="inputB" value="srma_in3.bam" ftype="bam"/>
+            <param name="reduce_or_iterate|reduce_or_iterate_selector" value="reduce"/>
+            <param name="reduce_or_iterate|inputB" value="srma_in3.bam" ftype="bam"/>
             <param name="sorted" value="true"/>
             <output name="output" file="multicov1_by_srma_in3.cov.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="coverageBedA.bed" ftype="bed"/>
-            <param name="inputB" value="coverageBedB.bed" ftype="bed"/>
+            <param name="reduce_or_iterate|inputB" value="coverageBedB.bed" ftype="bed"/>
             <param name="overlap_b" value="1"/>
             <output name="output" file="coverageBed_result2_F1.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="coverageBedA.bed" ftype="bed"/>
-            <param name="inputB" value="coverageBedB.bed" ftype="bed"/>
+            <param name="reduce_or_iterate|inputB" value="coverageBedB.bed" ftype="bed"/>
             <param name="overlap_a" value="1E-5"/>
             <param name="reciprocal_overlap" value="true"/>
             <output name="output" file="coverageBed_result3_f1r.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="multiCov1.bed" ftype="bed"/>
-            <param name="reduce_or_iterate_selector" value="reduce"/>
-            <param name="inputB" value="srma_in3.bam,coverageBed.bam" ftype="bam"/>
+            <param name="reduce_or_iterate|reduce_or_iterate_selector" value="reduce"/>
+            <param name="reduce_or_iterate|inputB" value="srma_in3.bam,coverageBed.bam" ftype="bam"/>
             <param name="sorted" value="true"/>
             <output name="output" file="coverageBed_result4_2bam.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="coverageBedA2.bed" ftype="bed"/>
-            <param name="inputB" value="coverageBed.bam" ftype="bam"/>
+            <param name="reduce_or_iterate|inputB" value="coverageBed.bam" ftype="bam"/>
             <output name="output" file="coverageBed_result5_unsorted.bed" ftype="bed"/>
         </test>
         <test>
             <param name="inputA" value="coverageBedA2.bed" ftype="bed"/>
-            <param name="inputB" value="coverageBed.bam" ftype="bam"/>
+            <param name="reduce_or_iterate|inputB" value="coverageBed.bam" ftype="bam"/>
             <param name="mean" value="true"/>
             <output name="output" file="mean_coverage.bed" ftype="bed"/>
         </test>