Mercurial > repos > iuc > bedtools

diff macros.xml @ 47:2892111d91f8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:40:09 +0000
parents 64e2edfe7a2c
children
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--- a/macros.xml	Sat May 18 23:28:38 2024 +0000
+++ b/macros.xml	Fri Feb 21 21:40:09 2025 +0000
@@ -51,16 +51,7 @@
         </param>
     </xml>
     <xml name="seed">
-        <conditional name="seed">
-            <param name="seed_choose" type="select" label="Choose Seed?">
-                <option value="False" selected="true">Random Shuffling</option>
-                <option value="True">Choose fixed seed</option>
-            </param>
-            <when value="True">
-                <param argument="-seed" type="integer" value="12345" label="Enter Seed" />
-            </when>
-            <when value="False" />
-        </conditional>
+        <param argument="-seed" type="integer" value="" min="0" optional="true" label="Seed" help="For reproducible 'randomness'"/>
     </xml>
     <xml name="split">
         <param argument="-split" type="boolean" truevalue="-split" falsevalue="" checked="false"
@@ -215,13 +206,19 @@
         <option value="median">Median - numeric only</option>
         <option value="mode">Mode - numeric only</option>
         <option value="antimode">Antimode - numeric only</option>
+        <option value="stdev">Standard deviation - numeric only</option>
+        <option value="sstdev">Sample standard deviation - numeric only</option>
         <option value="collapse">collapse (i.e., print a comma separated list) - numeric or text</option>
     </xml>
     <xml name="additional_math_options">
         <option value="count">Count - numeric or text</option>
         <option value="count_disctinct">Count Distinct - numeric or text</option>
         <option value="distinct">distinct (i.e., print a comma separated list) - numeric or text</option>
-        <option value="concat">concat (i.e., print a comma separated list) - numeric or text</option>
+        <option value="distinct_sort_num">distinct sorted numerially (i.e., print a comma separated list) - numeric</option>
+        <option value="distinct_sort_num_desc">distinct sorted numerially descending (i.e., print a comma separated list) - numeric</option>
+        <option value="distinct_only">delimited list of only unique values - numeric or text</option>
+        <option value="first">just the first value in the column - numeric or text</option>
+        <option value="last">just the last value in the column - numeric or text</option>
     </xml>
     <xml name="sorted">
         <!-- -sorted -g  -->