Mercurial > repos > iuc > bedtools

directory /test-data/ @ 29:6bb3cd018203 draft

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file a.bed 53 -rw-r--r--
file annotateBed1.bed 70 -rw-r--r--
file annotateBed2.bed 69 -rw-r--r--
file annotateBed3.bed 74 -rw-r--r--
file annotateBed4.bed 65 -rw-r--r--
file annotateBed_result.bed 208 -rw-r--r--
file bamToBed_result1.bed 412 -rw-r--r--
file bamToBed_result2.bed 404 -rw-r--r--
file bed12.bed 209 -rw-r--r--
file bed12ToBed6_result1.bed 214 -rw-r--r--
file bedToBam1.bed 74 -rw-r--r--
file bedToBam_result.bam 269 -rw-r--r--
file bedpeToBamBed1.bed 103 -rw-r--r--
file bedpeToBam_result1.bam 926 -rw-r--r--
file closestBedA.bed 13 -rw-r--r--
file closestBedB.bed 29 -rw-r--r--
file closestBed_a.bed 18 -rw-r--r--
file closestBed_b1.bed 38 -rw-r--r--
file closestBed_b2.bed 38 -rw-r--r--
file closestBed_c.bed 18 -rw-r--r--
file closestBed_d.bed 34 -rw-r--r--
file closestBed_result1.bed 27 -rw-r--r--
file closestBed_result2.bed 82 -rw-r--r--
file closestBed_result3.bed 42 -rw-r--r--
file closestBed_result4.bed 75 -rw-r--r--
file closestBed_result5.bed 75 -rw-r--r--
file closestBed_result6.bed 78 -rw-r--r--
file clusterBed_result.bed 61 -rw-r--r--
file complementBed_result1.bed 44 -rw-r--r--
file coverageBedA.bed 46 -rw-r--r--
file coverageBedB.bed 35 -rw-r--r--
file coverageBed_result1.bed 120 -rw-r--r--
file coverageBed_result2_F1.bed 117 -rw-r--r--
file coverageBed_result3_f1r.bed 117 -rw-r--r--
file expandBed1.bed 52 -rw-r--r--
file expandBed_result1.bed 120 -rw-r--r--
file expandBed_result2.bed 96 -rw-r--r--
file expandInput.bed 52 -rw-r--r--
file fisherBed.len 9 -rw-r--r--
file fisherBed1.bed 33 -rw-r--r--
file fisherBed2.bed 22 -rw-r--r--
file fisherBed_result1.bed 509 -rw-r--r--
file flankBed_result1.bed 105 -rw-r--r--
file flankBed_result2.bed 105 -rw-r--r--
file genomeCoverageBed1.bed 33 -rw-r--r--
file genomeCoverageBed1.len 19 -rw-r--r--
file genomeCoverageBed_result1.bed 57 -rw-r--r--
file getfastaBed_result1.bed 104 -rw-r--r--
file getfastaBed_result2.tabular 103 -rw-r--r--
file groupbyBed1.bed 955 -rw-r--r--
file groupbyBed_result1.bed 82 -rw-r--r--
file groupbyBed_result2.bed 80 -rw-r--r--
file groupbyBed_result3.bed 111 -rw-r--r--
file igv_bed_script.txt 177 -rw-r--r--
file intersectBed1.bed 22 -rw-r--r--
file intersectBed2.bed 11 -rw-r--r--
file intersectBed_result1.bed 11 -rw-r--r--
file intersectBed_result2.bed 22 -rw-r--r--
file intersectBed_result3.bed 11 -rw-r--r--
file jaccardBed1.bed 22 -rw-r--r--
file jaccardBed2.bed 11 -rw-r--r--
file jaccardBed_result1.bed 68 -rw-r--r--
file jaccardBed_result2.bed 68 -rw-r--r--
file linksBed1.bed 76 -rw-r--r--
file linksBed_result1.html 659 -rw-r--r--
file linksBed_result2.html 675 -rw-r--r--
file makeWindowBed1.bed 53 -rw-r--r--
file makeWindowBed_result1.bed 4726 -rw-r--r--
file makeWindowBed_result2.bed 94214 -rw-r--r--
file makeWindowBed_result3.bed 2382 -rw-r--r--
file makeWindowBed_result4.bed 795 -rw-r--r--
file mapBed1.bed 54 -rw-r--r--
file mapBed2.bed 90 -rw-r--r--
file mapBed3.bed 108 -rw-r--r--
file mapBed4.bed 180 -rw-r--r--
file mapBedA.bed 55 -rw-r--r--
file mapBedB.bed 90 -rw-r--r--
file mapBed_result1.bed 62 -rw-r--r--
file mapBed_result2.bed 66 -rw-r--r--
file mapBed_result3.bed 60 -rw-r--r--
file mapBed_result4.bed 62 -rw-r--r--
file mapBed_result5.bed 124 -rw-r--r--
file maskFastaBed_result1.bed 370 -rw-r--r--
file maskFastaBed_result2.bed 370 -rw-r--r--
file mergedBed1.bed 53 -rw-r--r--
file mergedBed2.bed 81 -rw-r--r--
file mergedBed3.bed 53 -rw-r--r--
file mergedBed4.bed 27 -rw-r--r--
file mergedBed_result.bed 14 -rw-r--r--
file mergedBed_result1.bed 27 -rw-r--r--
file mergedBed_result2.bed 27 -rw-r--r--
file mergedBed_result3.bed 27 -rw-r--r--
file mergedBed_result4.bed 14 -rw-r--r--
file mergedBed_result5.bed 16 -rw-r--r--
file mm9.len 585 -rw-r--r--
file mm9_chr1.len 15 -rw-r--r--
file multiCov1.bed 39 -rw-r--r--
file multiCovBed_result1.bed 47 -rw-r--r--
file multiIntersectBed1.bed 43 -rw-r--r--
file multiIntersectBed1.len 10 -rw-r--r--
file multiIntersectBed2.bed 22 -rw-r--r--
file multiIntersectBed3.bed 32 -rw-r--r--
file multiIntersectBed_result1.bed 175 -rw-r--r--
file multiIntersectBed_result2.bed 314 -rw-r--r--
file multiIntersectBed_result3.bed 223 -rw-r--r--
file multicov1_by_srma_in3.cov.bed 79 -rw-r--r--
file nucBed1.bed 12 -rw-r--r--
file nucBed1.fasta 370 -rw-r--r--
file nucBed_result1.bed 161 -rw-r--r--
file nucBed_result2.bed 259 -rw-r--r--
file nucBed_result3.bed 280 -rw-r--r--
file overlapBed_result1.bed 32 -rw-r--r--
file reldistBed_result1.bed 44 -rw-r--r--
file shuffleBed.len 41 -rw-r--r--
file shuffleBed1.bed 37 -rw-r--r--
file shuffleBed2.bed 11 -rw-r--r--
file shuffleBedA.bed 37 -rw-r--r--
file shuffleBedGenome.genome 42 -rw-r--r--
file shuffleBed_result1.bed 40 -rw-r--r--
file shuffleBed_result2.bed 44 -rw-r--r--
file shuffleBed_result3.bed 40 -rw-r--r--
file shuffleBed_result4.bed 40 -rw-r--r--
file slopBed_result1.bed 52 -rw-r--r--
file slopBed_result2.bed 52 -rw-r--r--
file sortBed1.bed 51 -rw-r--r--
file sortBed_result1.bed 51 -rw-r--r--
file spacingBed_result1.bed 62 -rw-r--r--
file srma_in3.bam 1038 -rw-r--r--
file subtractBed1.bed 37 -rw-r--r--
file subtractBed2.bed 23 -rw-r--r--
file subtractBed_result1.bed 26 -rw-r--r--
file subtractBed_result2.bed 26 -rw-r--r--
file subtractBed_result3.bed 13 -rw-r--r--
file tagBed1.bed 81 -rw-r--r--
file tagBed_result1.bam 1026 -rw-r--r--
file unionBedGraphs1.bg 36 -rw-r--r--
file unionBedGraphs1.len 10 -rw-r--r--
file unionBedGraphs2.bg 35 -rw-r--r--
file unionBedGraphs3.bg 36 -rw-r--r--
file unionBedGraphs_result1.bg 128 -rw-r--r--
file unionBedGraphs_result2.bg 144 -rw-r--r--
file unionBedGraphs_result3.bg 206 -rw-r--r--
file unionBedGraphs_result4.bg 206 -rw-r--r--
file windowBedA.bed 13 -rw-r--r--
file windowBedB.bed 29 -rw-r--r--
file windowBed_result1.bed 27 -rw-r--r--
file windowBed_result2.bed 55 -rw-r--r--