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changeset 30:db1841942d2b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b67e138b17f7e8cb34f59bed0925f691ec9740f3
author iuc
date Fri, 17 Aug 2018 05:42:39 -0400
parents 6bb3cd018203
children e19bebe96cd2
files flankBed.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
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line diff
--- a/flankBed.xml	Tue Jul 24 11:49:55 2018 -0400
+++ b/flankBed.xml	Fri Aug 17 05:42:39 2018 -0400
@@ -65,7 +65,11 @@
 
 .. class:: warningmark
 
-In order to prevent creating intervals that violate chromosome boundaries, bedtools flank requires a genome file defining the length of each chromosome or contig.
+In order to prevent creating intervals that violate chromosome boundaries, bedTools flank requires a bedTool genome file defining the length of each chromosome or contig. . This should be a two column tabular file with the chromosome name in the first column and the END coordinate of the chromosome in the second column.
+
+If you need this data for any genome that is at UCSC (http://genome.ucsc.edu), it can be extracted from the Table Browser with the "Get Data: UCSC Main" tool. Set "group" to "All Tables", "table" to "chromInfo", and "output format" to "all fields from selected table". 
+
+
 
 @REFERENCES@
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