Mercurial > repos > iuc > bellerophon

changeset 2:321347bd0494 draft default tip

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planemo upload for repository https://github.com/davebx/bellerophon commit a4601aa6ae17baebc453566301a387d80bd5c3d5
author iuc
date Mon, 04 Sep 2023 07:31:57 +0000
parents 25ca5d73aedf
children
files bellerophon.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bellerophon.xml	Fri Aug 27 10:46:26 2021 +0000
+++ b/bellerophon.xml	Mon Sep 04 07:31:57 2023 +0000
@@ -2,7 +2,7 @@
     <description>chimeric reads from Arima Genomics</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">bellerophon</requirement>
@@ -28,6 +28,7 @@
         --reverse $reverse_input
         --quality $quality
         --output 'merged_out.bam'
+        --threads \${GALAXY_SLOTS:-1}
         && samtools sort --no-PG -O BAM -o '$outfile' -@ \${GALAXY_SLOTS:-1} merged_out.bam
         ]]>
     </command>