# HG changeset patch
# User iuc
# Date 1651085206 0
# Node ID 1c8d0916f97f47c731a10507f84c8c828a0347a1
# Parent  f350d182f7867d0a4d77175db04905c3040a3c35
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/binning_refiner/ commit 05bd671a4765eb97583bac21729b26bec808adcd"

diff -r f350d182f786 -r 1c8d0916f97f binning_refiner.xml
--- a/binning_refiner.xml	Fri Feb 18 13:12:43 2022 +0000
+++ b/binning_refiner.xml	Wed Apr 27 18:46:46 2022 +0000
@@ -30,6 +30,7 @@
 Binning_refiner
 -i input_bin_dir
 -p 'refined'
+-m $m
 && mv 'refined_Binning_refiner_outputs/refined_contigs.txt' '$output_refined_contigs'
 && mv 'refined_Binning_refiner_outputs/refined_sources_and_length.txt' '$output_sources_and_length'
     ]]></command>
@@ -47,7 +48,8 @@
     <tests>
         <test expect_num_outputs="3">
             <param name="input_bins" value="MetaBAT_17.fa.gz,MetaBAT_18.fa.gz,MetaBAT_19.fa.gz,MetaBAT_20.fa.gz,MetaBAT_21.fa.gz,MetaBAT_22.fa.gz,MetaBAT_23.fa.gz,Concoct_1.fa.gz,Concoct_3.fa.gz,Concoct_8.fa.gz" ftype="fasta.gz"/>
-            <output_collection name="output_refined_bins" type="list" count="7">
+            <param name="m" value="256"/>
+            <output_collection name="output_refined_bins" type="list" count="8">
                 <element name="refined_1" ftype="fasta">
                     <assert_contents>
                         <has_size value="1320640"/>
@@ -97,6 +99,13 @@
                         <has_n_lines n="9219"/>
                     </assert_contents>
                 </element>
+                <element name="refined_8" ftype="fasta">
+                    <assert_contents>
+                        <has_size value="276224"/>
+                        <has_text text=">scaffold_955"/>
+                        <has_n_lines n="4554"/>
+                    </assert_contents>
+                </element>
             </output_collection>
             <output name="output_refined_contigs" file="output_refined_contigs.tabular" ftype="tabular"/>
             <output name="output_sources_and_length" file="output_sources_and_length.tabular" ftype="tabular"/>
diff -r f350d182f786 -r 1c8d0916f97f macros.xml
--- a/macros.xml	Fri Feb 18 13:12:43 2022 +0000
+++ b/macros.xml	Wed Apr 27 18:46:46 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.4.3</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.09</token>
     <xml name="requirements">
         <requirements>
diff -r f350d182f786 -r 1c8d0916f97f test-data/output_refined_contigs.tabular
--- a/test-data/output_refined_contigs.tabular	Fri Feb 18 13:12:43 2022 +0000
+++ b/test-data/output_refined_contigs.tabular	Wed Apr 27 18:46:46 2022 +0000
@@ -6,3 +6,4 @@
 refined_5	scaffold_1048,scaffold_1049,scaffold_1150,scaffold_126,scaffold_14,scaffold_232,scaffold_571,scaffold_66
 refined_6	scaffold_1667,scaffold_186,scaffold_259,scaffold_301,scaffold_32,scaffold_461,scaffold_466,scaffold_659,scaffold_708
 refined_7	scaffold_1140,scaffold_1172,scaffold_1303,scaffold_1510,scaffold_1614,scaffold_1649,scaffold_1814,scaffold_1852,scaffold_2104,scaffold_2153,scaffold_260,scaffold_273,scaffold_361,scaffold_369,scaffold_429,scaffold_589,scaffold_906,scaffold_987,scaffold_988
+refined_8	scaffold_1029,scaffold_1080,scaffold_1099,scaffold_1145,scaffold_1305,scaffold_1326,scaffold_1346,scaffold_1464,scaffold_1515,scaffold_1636,scaffold_1654,scaffold_1665,scaffold_1730,scaffold_1845,scaffold_1886,scaffold_1942,scaffold_1993,scaffold_2161,scaffold_2178,scaffold_817,scaffold_955
diff -r f350d182f786 -r 1c8d0916f97f test-data/output_sources_and_length.tabular
--- a/test-data/output_sources_and_length.tabular	Fri Feb 18 13:12:43 2022 +0000
+++ b/test-data/output_sources_and_length.tabular	Wed Apr 27 18:46:46 2022 +0000
@@ -6,3 +6,4 @@
 refined_5	693.6	MetaBAT_21_fa_gz.fasta.gz
 refined_6	612.08	MetaBAT_22_fa_gz.fasta.gz
 refined_7	538.59	MetaBAT_23_fa_gz.fasta.gz
+refined_8	265.02	Concoct_8_fa_gz.fasta.gz