Mercurial > repos > iuc > biobox_add_taxid

diff test-data/test-db/gencode.dmp @ 0:1e10251b9615 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
author iuc
date Sun, 25 Aug 2024 13:19:14 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-db/gencode.dmp	Sun Aug 25 13:19:14 2024 +0000
@@ -0,0 +1,28 @@
+0	|		|	Unspecified	|	                                                                 	|	                                                                 	|
+1	|		|	Standard	|	FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	---M------**--*----M---------------M---------------------------- 	|
+2	|		|	Vertebrate Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG 	|	----------**--------------------MMMM----------**---M------------ 	|
+3	|		|	Yeast Mitochondrial	|	FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**----------------------MM---------------M------------ 	|
+4	|		|	Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--MM------**-------M------------MMMM---------------M------------ 	|
+5	|		|	Invertebrate Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG 	|	---M------**--------------------MMMM---------------M------------ 	|
+6	|		|	Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear	|	FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--------------*--------------------M---------------------------- 	|
+9	|		|	Echinoderm Mitochondrial; Flatworm Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG 	|	----------**-----------------------M---------------M------------ 	|
+10	|		|	Euplotid Nuclear	|	FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**-----------------------M---------------------------- 	|
+11	|		|	Bacterial, Archaeal and Plant Plastid	|	FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	---M------**--*----M------------MMMM---------------M------------ 	|
+12	|		|	Alternative Yeast Nuclear	|	FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**--*----M---------------M---------------------------- 	|
+13	|		|	Ascidian Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG 	|	---M------**----------------------MM---------------M------------ 	|
+14	|		|	Alternative Flatworm Mitochondrial	|	FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG 	|	-----------*-----------------------M---------------------------- 	|
+15	|		|	Blepharisma Macronuclear	|	FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------*---*--------------------M---------------------------- 	|
+16	|		|	Chlorophycean Mitochondrial	|	FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------*---*--------------------M---------------------------- 	|
+21	|		|	Trematode Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG 	|	----------**-----------------------M---------------M------------ 	|
+22	|		|	Scenedesmus obliquus mitochondrial	|	FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	------*---*---*--------------------M---------------------------- 	|
+23	|		|	Thraustochytrium mitochondrial code	|	FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--*-------**--*-----------------M--M---------------M------------ 	|
+24	|		|	Rhabdopleuridae Mitochondrial	|	FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG	|	---M------**-------M---------------M---------------M------------	|
+25	|		|	Candidate Division SR1 and Gracilibacteria	|	FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	---M------**-----------------------M---------------M------------ 	|
+26	|		|	Pachysolen tannophilus Nuclear	|	FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**--*----M---------------M---------------------------- 	|
+27	|		|	Karyorelict Nuclear	|	FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--------------*--------------------M---------------------------- 	|
+28	|		|	Condylostoma Nuclear	|	FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**--*--------------------M---------------------------- 	|
+29	|		|	Mesodinium Nuclear	|	FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--------------*--------------------M---------------------------- 	|
+30	|		|	Peritrich Nuclear	|	FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	--------------*--------------------M---------------------------- 	|
+31	|		|	Blastocrithidia Nuclear	|	FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	----------**-----------------------M---------------------------- 	|
+32	|		|	Balanophoraceae Plastid	|	FFLLSSSSYY*WCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 	|	---M------*---*----M------------MMMM---------------M------------ 	|
+33	|		|	Cephalodiscidae Mitochondrial	|	FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG 	|	---M-------*-------M---------------M---------------M------------ 	|