Mercurial > repos > iuc > bioext_bealign

diff bealign.xml @ 7:a07a2d9ddd42 draft

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"planemo upload for repository https://github.com/davebx/bioext-gx/ commit e661c4b493283da980467b0f11c5deea54a83226"
author iuc
date Sat, 27 Nov 2021 10:07:57 +0000
parents c239e93d9f04
children 8a7462c0ac14
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--- a/bealign.xml	Mon Nov 08 11:41:11 2021 +0000
+++ b/bealign.xml	Sat Nov 27 10:07:57 2021 +0000
@@ -190,8 +190,9 @@
             <param name="input" ftype="fasta" value="query.fa" />
             <param name="reference_type" value="preset" />
             <param name="reference" value="CoV2-nsp8" />
-            <param name="add_background" value="Yes" />
-            <param name="background_source" value="data_table" />
+            <conditional name="background_source">
+               <param name="selection" value="data_table" />
+            </conditional>
             <param name="sequences" value="CoV2-nsp8" />
             <param name="alphabet" value="codon" />
             <param name="score_matrix" value="HIV_BETWEEN_F" />
@@ -203,7 +204,6 @@
             <param name="reference_type" value="preset" />
             <param name="reference" value="CoV2-nsp8" />
             <param name="save_reference" value="true" />
-            <param name="add_background" value="No" />
             <param name="alphabet" value="codon" />
             <param name="score_matrix" value="HIV_BETWEEN_F" />
             <output name="output" file="bealign-out4.bam" ftype="bam" lines_diff="2"/>