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comparison biom_add_metadata.xml @ 8:6ef0b5664c69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit 4d77c1e4bd9f6876ee338858a8cd4c7e9528d54c
author iuc
date Wed, 13 Sep 2023 18:53:16 +0000
parents a3b86937ead6
children 3b6f97e7094c
comparison
equal deleted inserted replaced
7:0b3c3ad92827 8:6ef0b5664c69
36 #end if 36 #end if
37 $output_as_json 37 $output_as_json
38 ]]> 38 ]]>
39 </command> 39 </command>
40 <inputs> 40 <inputs>
41 <param name="input_fp" argument="--input-fp" type="data" format="biom1" label="BIOM File"/> 41 <param argument="--input-fp" type="data" format="biom1" label="BIOM File"/>
42 <param name="sample_metadata_fp" argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" /> 42 <param argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" />
43 <param name="observation_metadata_fp" argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/> 43 <param argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/>
44 <param name="sc_separated" argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" /> 44 <param argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" />
45 <param name="sc_pipe_separated" argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/> 45 <param argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/>
46 <param name="int_fields" argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" /> 46 <param argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" />
47 <param name="float_fields" argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" /> 47 <param argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" />
48 <param name="sample_header" argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" /> 48 <param argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" />
49 <param name="observation_header" argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" /> 49 <param argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" />
50 <param name="output_as_json" argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" /> 50 <param argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" />
51 </inputs> 51 </inputs>
52 <outputs> 52 <outputs>
53 <data format="biom1" name="output_fp"> 53 <data format="biom1" name="output_fp">
54 <change_format> 54 <change_format>
55 <when input="${str( $output_as_json )}" value="" format="h5" /> 55 <when input="${str( $output_as_json )}" value="" format="h5" />