Mercurial > repos > iuc > biom_convert

comparison biom_convert.xml @ 12:d4d4e9febf5c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit 950bc3657a7bd6975337324bd0f1d0e5c0afc0f4
author iuc
date Fri, 15 Mar 2024 15:26:20 +0000
parents 091bb5922a82
children
comparison
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11:091bb5922a82 12:d4d4e9febf5c
112 </inputs> 112 </inputs>
113 <outputs> 113 <outputs>
114 <data format="biom1" name="output_fp"> 114 <data format="biom1" name="output_fp">
115 <change_format> 115 <change_format>
116 <when input="output.type_selector" value="tsv" format="tabular" /> 116 <when input="output.type_selector" value="tsv" format="tabular" />
117 <when input="output.biom_type" value="json" format="biom1" /> 117 <when input="output.biom_type.selector" value="json" format="biom1" />
118 <when input="output.biom_type" value="hdf5" format="biom2" /> 118 <when input="output.biom_type.selector" value="hdf5" format="biom2" />
119 </change_format> 119 </change_format>
120 </data> 120 </data>
121 </outputs> 121 </outputs>
122 <tests> 122 <tests>
123 <test> 123 <test>
130 <param name="type_selector" value="biom"/> 130 <param name="type_selector" value="biom"/>
131 <param name="table_type" value="OTU table"/> 131 <param name="table_type" value="OTU table"/>
132 <conditional name="biom_type"> 132 <conditional name="biom_type">
133 <param name="selector" value="json"/> 133 <param name="selector" value="json"/>
134 </conditional> 134 </conditional>
135 <param name="sample_metadata_fp"/>
136 <param name="observation_metadata_fp"/>
137 </conditional> 135 </conditional>
138 <output name="output_fp" file="output_taxonomy_1.biom1.re" ftype="biom1" compare="re_match"/> 136 <output name="output_fp" file="output_taxonomy_1.biom1.re" ftype="biom1" compare="re_match"/>
137 </test>
138 <test>
139 <conditional name="input">
140 <param name="type_selector" value="tsv"/>
141 <param name="input_fp" value="input_abundance_taxonomy_1.tabular" ftype="tabular"/>
142 <param name="process_obs_metadata" value="taxonomy"/>
143 </conditional>
144 <conditional name="output">
145 <param name="type_selector" value="biom"/>
146 <param name="table_type" value="OTU table"/>
147 <conditional name="biom_type">
148 <param name="selector" value="hdf5"/>
149 </conditional>
150 </conditional>
151 <output name="output_fp" ftype="biom2">
152 <assert_contents>
153 <has_size value="37k" delta="10k"/>
154 </assert_contents>
155 </output>
139 </test> 156 </test>
140 <test> 157 <test>
141 <conditional name="input"> 158 <conditional name="input">
142 <param name="type_selector" value="tsv"/> 159 <param name="type_selector" value="tsv"/>
143 <param name="input_fp" value="input_abundance_1.tabular" ftype="tabular"/> 160 <param name="input_fp" value="input_abundance_1.tabular" ftype="tabular"/>