--- a/tradis_gene_insert_sites.xml	Wed Jan 29 10:41:06 2020 -0500
+++ b/tradis_gene_insert_sites.xml	Fri Feb 07 05:20:39 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="tradis_gene_insert_sites" name="Bio-TraDis counts to gene insertion data" version="@VERSION@">
+<tool id="tradis_gene_insert_sites" name="Bio-TraDis counts to gene insertion data" version="@TOOL_VERSION@+galaxy@VERSION@">
     <description></description>
     <macros>
           <import>macros.xml</import>
@@ -12,20 +12,20 @@
     
     <inputs>
         <param name="input_counts" type="data" format="tabular" label="Read counts" help="Read counts at each nucleotide position for both strands. The first column contains forward strand counts, and the second contains reverse strand counts."/>
-        <param name="input_annot" type="data" format="txt" label="EMBL file containing the reference genome annotations"/>
+        <param name="input_annot" type="data" format="embl" label="EMBL file containing the reference genome annotations"/>
        <param name="trim3" type="float" value="0.1" min="0" max="1" label="Portion of the gene to trim in 3' end'" help="Trim reads at the 3'end of genes. Some transposon insertions can be little disruptive when they occur end of genes. Trim to ignore these reads."/>
        <param name="trim5" type="float" value="0" min="0" max="1" label="Portion of the gene to trim" help="Trim reads at the 5'end of genes. Some transposon insertions can be little disruptive when they occur end of genes. Trim to ignore these reads."/>
        
     </inputs>
     
     <outputs>
-        <data name="gene_insert_sites" format="csv" from_work_dir="./*.csv"/>
+        <data name="gene_insert_sites" format="csv" from_work_dir="./*.csv" label="${tool.name} on ${on_string}"/>
     </outputs>
     
     <tests>
         <test>
             <param name="input_counts" ftype="tabular" value="tiny.out.gz.CP009273.1_60_120.insert_site_plot.gz"/>
-            <param name="input_annot" ftype="txt" value="tiny_ref.embl"/>
+            <param name="input_annot" ftype="embl" value="tiny_ref.embl"/>
             <param name="trim3" ftype="float" value="0"/>
             <param name="trim5" ftype="float" value="0"/>
             <output name="gene_insert_sites" file="tiny.out.gz.CP009273.1_60_120.tradis_gene_insert_sites.csv"  compare="sim_size" delta="200" />
@@ -73,4 +73,3 @@
 
 
 
-