Mercurial > repos > iuc > biotradis
diff test-data/tiny_ref.embl @ 0:738e58ed9cc2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/biotradis commit 1c0a0f88149bf8863a89c58bace81e070b3adb5a"
author | iuc |
---|---|
date | Wed, 29 Jan 2020 10:41:06 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tiny_ref.embl Wed Jan 29 10:41:06 2020 -0500 @@ -0,0 +1,68 @@ +ID CP009273; SV 1; circular; genomic DNA; STD; PRO; 4631469 BP. +XX +AC CP009273; +XX +PR Project:PRJNA257976; +XX +DT 10-SEP-2014 (Rel. 122, Created) +XX +DE Escherichia coli BW25113, complete genome. +XX +KW . +XX +OS Escherichia coli BW25113 +OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; +OC Enterobacteriaceae; Escherichia. +XX +RN [1] +RP 1-4631469 +RA Grenier F., Matteau D., Baby V., Rodrigue S.; +RT "Complete genome sequence of Escherichia coli BW25113"; +RL Unpublished. +XX +CC ##Genome-Assembly-Data-START## +CC Assembly Method :: Newbler v. 2.6 +CC Reference-guided Assembly :: U00096.3 +CC Genome Coverage :: 100x +CC Sequencing Technology :: Illumina HiSeq; Sanger +CC ##Genome-Assembly-Data-END## +XX +FH Key Location/Qualifiers +FH +FT source 1..300 +FT /organism="Escherichia coli BW25113" +FT /strain="K-12" +FT /sub_strain="BW25113" +FT /mol_type="genomic DNA" +FT /country="USA:Indiana" +FT /collection_date="2000" +FT /note="from B. L. Wanner laboratory; genotype: rrnB3 +FT lacZ4787 hsdR514 (araBAD)567 (rhaBAD)568 rph-1" +FT /db_xref="taxon:679895" +FT /culture_collection="CGSC:7636" +FT gene 190..255 +FT /gene="thrL" +FT /gene_synonym="ECK0001" +FT /gene_synonym="JW4367" +FT /locus_tag="BW25113_0001" +FT CDS 190..255 +FT /codon_start=1 +FT /transl_table=11 +FT /gene="thrL" +FT /gene_synonym="ECK0001" +FT /gene_synonym="JW4367" +FT /locus_tag="BW25113_0001" +FT /product="thr operon leader peptide" +FT /function="leader; Amino acid biosynthesis: Threonine" +FT /db_xref="EnsemblGenomes-Gn:BW25113_0001" +FT /db_xref="EnsemblGenomes-Tr:AIN30539" +FT /protein_id="AIN30539.1" +FT /translation="MKRISTTITTTITITTGNGAG" +XX +SQ Sequence 4631469 BP; 1140509 A; 1177154 C; 1174646 G; 1139160 T; 0 other; + agcttttcat tctgactgca acgggcaata tgtctctgtg tggattaaaa aaagagtgtc 60 + tgatagcagc ttctgaactg gttacctgcc gtgagtaaat taaaatttta ttgacttagg 120 + tcactaaata ctttaaccaa tataggcata gcgcacagac agataaaaat tacagagtac 180 + acaacatcca tgaaacgcat tagcaccacc attaccacca ccatcaccat taccacaggt 240 + aacggtgcgg gctgacgcgt acaggaaaca cagaaaaaag cccgcacctg acagtgcggg 300 +//