Mercurial > repos > iuc > bracken

annotate test-data/test2.log @ 9:0c7b6eb7e752 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 9af8730b86781bcbbe1cb62402967fa316cfec80
author iuc
date Mon, 29 Jul 2024 07:25:12 +0000
parents 1d4bd12f01cf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
1d4bd12f01cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 2d68ebc8d29e6046811970c6ef04f683e9916857
iuc
parents: 6
diff changeset
1 PROGRAM START TIME: 01-18-2024 14:06:58
1d4bd12f01cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 2d68ebc8d29e6046811970c6ef04f683e9916857
iuc
parents: 6
diff changeset
2 BRACKEN SUMMARY (Kraken report: /tmp/tmp49rzn0wx/files/f/a/a/dataset_faa2d0a2-78f4-4cc2-b304-c8202c4ffb77.dat)
6
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
3 >>> Threshold: 10
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
4 >>> Number of species in sample: 1
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
5 >> Number of species with reads > threshold: 1
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
6 >> Number of species with reads < threshold: 0
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
7 >>> Total reads in sample: 45
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
8 >> Total reads kept at species level (reads > threshold): 42
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
9 >> Total reads discarded (species reads < threshold): 0
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
10 >> Reads distributed: 1
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
11 >> Reads not distributed (eg. no species above threshold): 0
79450f7fd718 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit c396abec691d64fc4cb7f205f54c01b1be7fd649
iuc
parents:
diff changeset
12 >> Unclassified reads: 2
8
1d4bd12f01cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 2d68ebc8d29e6046811970c6ef04f683e9916857
iuc
parents: 6
diff changeset
13 BRACKEN OUTPUT PRODUCED: /tmp/tmp49rzn0wx/job_working_directory/000/4/outputs/galaxy_dataset_27bf8d97-38f4-489a-a61b-6b567bbc8761.dat
1d4bd12f01cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 2d68ebc8d29e6046811970c6ef04f683e9916857
iuc
parents: 6
diff changeset
14 PROGRAM END TIME: 01-18-2024 14:06:58