--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_003198.1_simulated_R1.fastq	Wed Oct 16 16:57:55 2019 -0400
@@ -0,0 +1,180 @@
+@NC_003198.1-90/1
+AATAAAAATGACAGAGTTCACAACATCCATGAACCGCATCAGCACTACCACCATGACCACCATCACGATTACTACAGGTAACTCTGCGGGCGGACGCGTA
++
+@CCF1FFF2HHHF@29I)IJIHIGIJGJE?CHJJBJGJHGHFJJH#J>2G0IJI#EHD=JFDDACF#GCE=J#;FC>DEA5F##D0B>CD9##CAA>B5D
+@NC_003198.1-88/1
+TCATAACAGGGGAAATTTATTGAAATTAAATATATCGCCAGCAGCACATGAACAGGTTTCGGACTGTGATGAATTTAAAAAGTTATTGACTTCGGCGCTC
++
+CCCFDFFBDHDHHJF#2#<GJGJJA#JJEE#JJII;?IEGIIBAGGBGGDJCIJ#JJJI;=I6#CI=DDD#31;ABDC#>H#CDECCDB>DC##DAD##?
+@NC_003198.1-86/1
+GGCGATACGGCGAGTTGATTCCGCGATATCGACGGTAGATTCAAGGTAATGGCCCACCGCCAGCAGTTTTTCTACCGGATCGATCACCCTGAGGCGAAGT
++
+@CCFFF?DCHCH+IJ#GIJHICHGHHJHGGEIJCIGJJJ?GJIGHHGJ=GDJII?<A;GHFJDE6#J'IG>?F#E>C>=EDCDAADCC#9?C#D#9D#>C
+@NC_003198.1-84/1
+CACAGAAAAAAGCCCGCACCTGAACAGTTCGGGCTTTTTTTTCGATCTGAGATCACGAGTTAACAAGCATGCGAGTGTTGAAGTACTGCAGAACATCAGT
++
+@CCFFFD<HDFHHJIJIJJJJFFJJJIF+JIGGDDJJIJJJFHIE#F#JFJHIBDH#J##HFD=IG#HA#G8C?FE@>F?DEHA(?#->#;#CD:CA>@D
+@NC_003198.1-82/1
+CCGGGCACTGACCCAGCAGGCTGATACCATGCAAAACATGTTTGATGTGAGCGAATTTTTGTTCGACAACCATTTTCAACCGTGCAACCCAGTATCCCGG
++
+CC@+DFDFHHGDHHIIIJGIFJIAJ#I7JIIHDJHIIJAFHIIG:?#I#GFCB4F=:#AJGIDJIJDDHFIBADGADH@EAD#DECD#C##>#A:D@D?,
+@NC_003198.1-80/1
+ATAATCGCGAGCGACATTTGTTCGCCGCGGCAAATCAGCGCGGCGTTGATGCTATCCGGGCACTGATCCAGCAGTCTGATAACATGCAAAAAATGTTTGA
++
+C@CDBFFD:F#HH#BBGJI!JIIIBJ!GHDFCI>IJIFAIIAHDBIGII?HIIBCJ?BAHFGJ>HE(CJ@2ECE!DBCB=D#FB@;@CCC<#<2>#D@AC
+@NC_003198.1-78/1
+CAGAAAAAAGCCCGCACCTGAACAGGGCGGGCTTTTTTTTCGACCAGAGATCACGAGGTAACAACCATGCCAGAGTTGAAGTTCGGCGGTACATCAGTGG
++
+@7@FFFFDFFFHDJJJIBJIJGIIA#IJIJJ*JE#IJJJDBBJGJICHJ<BIGJ?HJIFEHEFGIEBHD@#FD#=ADC#CDA<8>BD5>@C#D:CDD#B>
+@NC_003198.1-76/1
+GCGAAAATTACCAACTCTCTGGTGGCGATTATTTAAAATACTATCGGCGGCCAGGATGCTTTGCCGACTATCAGCGGTGCCGAACATTTTTGCTCTGTCC
++
+?<BFF<E?HHHHHJJ##II#IJ;<JJA<J#IJ:7JJ@D#IJIBJGJJGGGH?EHB4FE@BEI@FI(D#BDG>:##C!H>CBEDDB#F#B2<##BCDC##,
+@NC_003198.1-74/1
+GAGGTTACAACCATGCGAGTGTTGTAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGCTATTATGGAACGCAATTCCAGCC
++
+B1C(F#FBHHHHHJJGJGIEJ@JH#G1AC>BJAJJJJJJJHJIGIIJI<DJ#GIFF>GHDHJ@IH5FFIEDCD@H=#E#=(#?CDD(#?DA#DCDBDB#C
+@NC_003198.1-72/1
+CGCAGAAAACGTTCTGCATTTGCCACGGATGTACCGCCGAACTTCAACACTCGCATGGTTGTTACCTCGTCGCCTCTGGTCACAAAAAAAGCTCGCTCAG
++
+BCCFFFDFHHHH:BIEIIJEJHJECI#GJI+FEI?BFGJE@IJCJDHGJGIJ#F;?)?GIIH;8CABGH?###I?F=F@;A##BC<CCB>B>#CA@#D#D
+@NC_003198.1-70/1
+CCCGGCTGCGCGCTGGCAAGACCTGGGAGCAGGTCAGAAAAAATACGTTCGGCATCGCTGATATTCGGCAAAGCATCCTGGCCGCCGACAGTTTTTTCAA
++
+@CC?FFDFH#DFHJF@JEF1#IHID#IGJJDCG#EEJIJHI<JGJBHHGJIGG9.I:I>JED:JDD@B=;J#@HC93#ED#B;CC?@D#CCC#DBB>DEB
+@NC_003198.1-68/1
+AAGTTCGGCGGTACATCAGTGGTAAATGGAGAACGTTTTCTGCGTGTTCCCGATATCCTGGAAAGCAATTTCAGGCAAGGGCAGAGACCGAATTCACTTT
++
+CB:FFFADDHF;>IJIHJJHJI#JIIJJ#JCJGEIDJJICGJDIGCBJ#AFIIFHD#GC3DFJIIF.HCG#JFBD:DF3D#CCE##;#DC:#####D#D,
+@NC_003198.1-66/1
+TAACCAATATAGGAATACAAGACAGACAAATAAAAATGACAGAGTACACTACATCCATGAACCGAATCAGCATGACCTCCCTTACCTCGATCACCATTAC
++
+@B@DFFFDD@HGBEHI#+JIJIGIJIJ?+CIGJJJIIDJJGEFHIJAIJ#CIGHDEA9GCC=H8#DHHGEF;#(FCI#?F#CDC>##C(CDBDCC##ADD
+@NC_003198.1-64/1
+CCAGCAGGCTGATACCATGCAAAACATGTTTGATCTGAGCGAATTCTTGTTCGACAACCATTTTCAACCGTGCACGCGGGATTTCCGGCAGCGCGCTGGC
++
+@8CFFFF@GHF+HFIJIIBGII@I?IJJIIFJIDGI@DIIC#IJE@IJJJ@EFDJGJJCDEH?=JGH9#DG=DC(HDEECD#E#ADC>D#D9D#@CC3DC
+@NC_003198.1-62/1
+GCCTCCAGGAGTCCCGCCATAATCGCGATCTACATTTTTTGGTCACGGCAAATCAGCGCGGCGTTCAAGCTATCCGGGCACTGAACCAGCAGGCTGATAA
++
+C@=FFDDFHDGHHBHGEJC6JGDHBHEGJJ#I?AIIGJDF#I#JJGA9@F@'IEGJJICIGCDHE#C#HFBHABE;HJA,AC;5#D#FCBD+D5E@9?A,
+@NC_003198.1-60/1
+AGAATATCGGCAACACGGAGAAAACGTCCTGCATTTGCCACTGATGTACCGCCTAACTTCAACACTAGCATGGTTGTCACCTCGTGCTATCTGGTCGACA
++
+??#DFFFFDG@:HJIJ@2JEJJHJ*EI!HJJIAJ0<IJ6JBB#I>GICHGHD?#(AAIAIH.DJJE#FA7EDAD@B;#FECB.DB;#D#?ADAEC@AD#D
+@NC_003198.1-58/1
+GTAATGGCCCACCGCCAGCAGTTTTTCTACCGGATCGATCACCGTGATGCGATGTCCACGAGCCTCCACGAGTCCCTCCATAATAGCGGTCGTCATTATT
++
+B@CFFDDFHHGFHJB<J;JHIG#J>ACAJ?JIGGD#JHJJFC?#BD?#F#HJEGIFIJHH#F@DJEDG#@DCDECE#DGBDBB8#5DD#AA5#DCD:#C<
+@NC_003198.1-56/1
+ACAGAGTACACAACATCCATGAACCGCATCAGCACCACCACCACTACCACCATCACCATTACCACAGGTAACGGTTCGGGCTGACGCGTACGGGATACAC
++
+C@CFDF?FD#HF?4JI;JE3IEHIIJJ9EII9J?JF)JEDJBI#DCIF>JGI?JCIG9JJID#IFH8FECJCEDC#E;C#5HD@E#5B=#?#B>E###DC
+@NC_003198.1-54/1
+CGTGCAATTACTTTAACCAATATAGGAATACAAGACAGACAAATAAAAATTACAGAGTACACAACATCCATGAACCGCATCAGCACCACACCCATTACCA
++
+@C#DFF##HHCHGIH@<JJJCFIIJJHF7JIFHII@EIA9FFJJJFJ)DJ#G@G);BFFCE+HJHC7#)A8CF#?DB>EE9F@ABBCD###A2D@D:C#?
+@NC_003198.1-52/1
+GTGCGGGCTTTTTTTTCGACCGGAGCTCAGGAGGTAACAACCATGCGAGTGTTCAACTTCGGCGGTACATCAGTTGCAAATGCCGAACGTTTTCTGCGAG
++
+@?@DFDFF<HHHHJJ=IJGJJ#IJJ#JIF##JCDCJHJGIHJGBJCEGBIG?I#JH*IBDIBA#FDI.@AFH@9#<BBED:?F!@DCBCFDB;(CDCA#,
+@NC_003198.1-50/1
+GTCAGAAAAAATACGTTCGGCATCGCTGATATTCGGCAAAGCTCCCTAGCCGCCGATAGTTTTATCAATCATCGCCACCAGATGGTTGCGAGTTTCCGAG
++
+@C@FFDFDGFHHHJ#AI@GEHJEIGJHCJGJDJF0IJIJB/I##E*>#AGCIBG?HEHJA#IF#?FF#AD=C7>BA@CCD+E>BBB#E##4#DD2#@D#D
+@NC_003198.1-48/1
+TTACCAACCATCTGGTGGCGATGATTGAAAAAACTATCGGCGGCCAGGATCCTTTGCCGAATATCAGCGATGCCGGACGAATTTTTTCAGACCAGCTAGC
++
+CBCFFFF3HG7G=IJBJJJFIAJIIIGJH9JGIJJ?IIBD8DIAJGFICE#JGJD<HIJ&JHEEFDG;3JC==9B#DFE#<EEDD<FA#DBEC#A8A#@C
+@NC_003198.1-46/1
+AAAAAAAGCCCGCACTGTTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTAAGCGTCTGCCGGCACCGTTACCTGTGGTAATGGTGATGGTGGTAATGGTG
++
+@CCDB:F#1FHHFJ<IIJJHJ9IJ8I>I=IAGEJIHJDHJI4GJJHGHG@#DCGBD#DJ=#3FAI?HGDAE;B5;?DDH?FHC:CECC?CD?C?CBCA<,
+@NC_003198.1-44/1
+ACAAGACAGACAAATAAAAATGACAGAGTACACAACATCCAAGAACCGCATAAGCACCACCACCATTACGGCCATCACCATTACCACAGGCAACGGTGCG
++
+C@CAFFDFGB+FH2G9GJ<JJJ>JEGJC)=IJIH9IGF#JH*@#<H9GCAC#5EIDIHGII?HCHIJ=>#&G#?F:FHD::#<?B#D>C>#ABDD<DDB,
+@NC_003198.1-42/1
+GAAAAAAGCCCGCACCTGAACAGTGCGGGCATTTTGTTCGACCAGAGATCACGAGGTAACAACCATGAGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA
++
+B8CFAFF3DHGDDFJ@I+HIJ@JIGDGJHJ#3JJJ#IH9J@H?GJ)HG:##J=JGG#JCFHBGG@DG##HJ?A,E;;>D@?D:BCD#DC>;?CD#E@DEA
+@NC_003198.1-40/1
+TGAGCGAATTCTTGTTCGACAACCATTTTAAACCGTGCAAGCGGGAATCCCGGCTGCGCGCTGGCAAGCCTTGCGATCAGGTCAGAAAAAATACGTTCTG
++
+B@?+?DFFHHHHBIII#IAIJ+B<EIJJG#HJDIJGJGFICEIGJD:JJCGIDHIGBICHIIG6DFDA#I#A<EF3#H#F<CCC<B4C<B9#>D:DAD#B
+@NC_003198.1-38/1
+CAGAAAACGTTCTGCATTTGCAACTGATGTGCAGCCGAACCTCAACACTCGCATGGTTCTTGCCTCGCGATCTCTGGTCGCAAAAAAAGCCCGCAATATT
++
+B;?FFF=FHFFHDJFJIHHIJ#JJGI9?GJ#J#BIJIIIG#JFCJI*G9G=JGJJJGJ#JJ#JJAEI#>CC>BHC>CDED)#DDHCCCACC>CB;####:
+@NC_003198.1-36/1
+TGAAAATAAATATATCGCCAGCAGCACATGAACAAGTTTCGGAATGTGATCAATTCAAAAATTTATTGACTTACGCTGGCAGATACTTTTACCAATATAG
++
+C=CF=FDAGHDHHJGB?JIIFJIJJIEHFJI<JHJ0C?CI(HHJEJJGIG94CII#C#EHJ5IIFFJIH;DHE#D##DCE;DFCADCDD#AC#9BDDACC
+@NC_003198.1-34/1
+TTCAACACTCGCATGGTTGTCACCTCGTGATCTCTGGTCGGAAAAAAAGCCCGCACTGTCCAGGTGCTGGCTTTTTTCTGTGGTTCCTGTACGCGTCAGC
++
+;C@?BFFFHHHH?JIJ@JJG!EIDIHIJFIIGI;HJIDGG!GF9:J4BHJHH;>JIHFF!=@CHCIE#:#C8CG?CDAFA?C#BDE9@@D?C#D>>CD@D
+@NC_003198.1-32/1
+GCTATCCGGGGACTGACCCAGCAGGCTGATACCATGTAAAACATGTTTGATCTGAGCGAATTCTTGTTCGACAACCATTTTCAACCGTGCAAGCGGGAAT
++
+@@CFFBFFHH#HHJIJIGJGHJJIJG#HIIDJJJIG#IBH@B9IJIGH<EJHCJ?=B@HIIJHHHC?H#C@8ECHC;@;AD3H##6:@AE8:DE#C>;?;
+@NC_003198.1-30/1
+GGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATTCCAGACAAGTGCAGGTTGCGAACGAACTTTCCGCCCCCGCGAGAATTACC
++
+?C<D;FDFHG@DGABFHHJJ@IJJJGI3EIBGGFJHD:4CHBG#FIDJ9=IBIE#EIFF#.HDE(A#CC)E#@3#DE@CIC==>D<DAD<AD#D@#3ABC
+@NC_003198.1-28/1
+TTATCAACCATGTGGTGGCGATGATTGAAAAAACTATCGACGTCCAGGATGCTTTGACGAATATCAGCGATGCCGGACGTAGTTTATATGACCTCCTAGC
++
+?CC#FDFFHHC#HGEIJHIDCHGIJ>>GG>IIJ?IFHHJ#DJ'?FDJDIEHJJJGI#H8EIH#FIGJC>FCDECE#ECBCF#CDF#B#CCBA>B#43#C@
+@NC_003198.1-26/1
+TGTGCAAGCGGGAATCCCGGCTGCGCGCTGGCAAGTCCTGCGAGCACGTCAGAAAAAATACGATCGGCATCGCCGATATTCGGCAAAGCATCCAGGGCGC
++
+#CCF?FD>F-FHACBJJFHHI:#IHI?JGJGFIJJIJ#J(9@#BFA#BGGI2HII*BIIGG>#@8H#IHH#J##;@>>DEEBFB;CCCB@-#C#?C#?CD
+@NC_003198.1-24/1
+CGGCATCGCTGATATTCGGCAAAGCATCCTGGCCGCCGATAGGTTTTTCAATCATCGCCACTAGATGGTAGGTAATTCTCGCGTGGGTGGATATGACGGA
++
+@C=FFFFFFHFHH+JGGIJ8IIEFIJHJIJF?GGIAJFJBJ<#G@JJGGIH7CJEJIIICG#E#E@=DE#ED3E5>C#F#DC<#ADH#CDB#D##?>?D,
+@NC_003198.1-22/1
+CAGCAGTTTTTCTACCGGATCGATCACCGTGACGCGATGTCCACGCTCCTCCAGGAGTCCCCCTATAATTGCGATCGACATTTTTTCGTCACGGCAAATC
++
+@CCFFFBFDBHH2JJGEIJIJIJ#J<JIHFBJBJEIDGDGIDGI#D#CJIIGBIG:IFIBI#7#ICH9I#ED@6?>BAD@.BFB5BC##A?DAAE>DCBD
+@NC_003198.1-20/1
+CGACCGTACTTTCCGCCCCCGCGAAAATTACCAGCCATCTAGTGGAGATGATTGAAAAGACTATCGGCGGCCAGGATGCTTGGGCGAATAACATCGATGC
++
+?CCDDFDDHHCHHGFJA<JG>IAGJJJHICHJ9#9GHEI8#JJI??IDCDIEJJIGIF#CHF9IE?>2DI=DF#>H>G>C;#H#FDDC:D##>(DD@##,
+@NC_003198.1-18/1
+TTAACCAATATAGGAATACAAGACAGACATATAAAAATCACAGATTACGCAACAACCATGAACCGCATCAGCACCACCACGTTTACCACGATCACCAATA
++
+@BCDFFFFGHDH?JII:#IFHJ<IGF5JJ#;GIJIGFC#JBCHE##J9#IFGFG#II0HG7IJHFF.JI:F(C@CA@BDB##FCCHA@###9D#EAC#AB
+@NC_003198.1-16/1
+GCGGGCTTTTTTTTCGACCAGAGATCACGAGGTAAAAACCATGCTAGTGTTGAGGTTCGGCGGTACATAAGTGGCAAATGCAAAACGTCCTCTGCGTTTT
++
+?@1FDFFDHGFB2EIJ)CJHEIHJIJJHGGJIJJ?#IJFIFIIG#DB#G@GII#HB#DIDIEJE@-EJ#JDBE?FDC#E9>@##@C?@##DDCD@DD#DD
+@NC_003198.1-14/1
+AACGTTTTCTGCGTGTTGCCGATATACTCGAAGGCAATTCCAGGCAAGGGCAGGTAGCGACCGTACTTTCCGCCCCCGCGAAAGTTAGCAACCTCCTGGT
++
+?@CFFDDFDHDDHIDIGJIC+FG:3#HJ#I=B##@ICGIGDJI9EJIII@JJGDJGCDBC(DF.DHHG<B;C?HDCE>BDCAB#DAC#DDAE>##DDDB,
+@NC_003198.1-12/1
+ACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTCGCCGATATTCTGGAAAGCAATTCCAGGCAAGGGC
++
+BCCFFFFDH3HFGADGGEJJBJJIJHEGFIJJHIG#GECDFIIJJJBB?BJD6JJJC>CHJ=GDI-DACGEGC?D@;HDA7DD>CD>FECCDD=:C@D#D
+@NC_003198.1-10/1
+ACAGTGGAAATTGATTGAAAATAAAGATATCGCCAGCAGCACATGAACAAGTTTCGGAATTTGATCAATTTAAAAATTTATTGAGTTATGCCGCCAGATA
++
+@<CF#FFFDDGFDEIBIJJJGIJE##?EFEIJGIGG)FDDIIIJJA#GJJFEHFHHEIJI#EHD)5I9C,C#F#JD>#<?#DDC#>;C#(@#C#CD8@#C
+@NC_003198.1-8/1
+GGCCGGGTTCTGGCTGGCGGCGATACGGCGAGTCGATTCCGCGATACCGACGGTAGATTCGAGGTAATGGCCAACCGCCTGCAGTTTTTCTACCGGAGCG
++
+CC@7FAD#HHHHHII+AHIEJIGJEGJ:IIJGF?GCDIC<GAJ#JF4JJHBJBHHG#EGF#CJCECEH:HJD#FDG;EG#A5FDDC5D#D@#5?ADD#C,
+@NC_003198.1-6/1
+CTTCAACACTTGCATGGTTGTTACCTCGTGATCTCTGGTCGAAAAAAAAGCCCGCACTGTTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTGCACATCAG
++
+CCB=FFFFHD#AH<JJIJJJJ?IDIHI#ICIH46IJ0CIJGI9BJJJGJJFI)#JHFFH7H?FIB<ECCAAJ#C;HA:A>/EF<EDE@@CC#D#E#>BAD
+@NC_003198.1-4/1
+ATCGCCACCAGATGGTTGGTAATTTTCGCGGGGGCGGAAAGTACGGTCGCTACCTACGCTTGGCTGGAATTGCATTCTAGAATATCGACAGCATGCAGAA
++
+C@@FFFFF?HAHHE7BIICHJJJJDHEJEGHJJJJIIF@J?EFIHGJ@:;HJJDI#I#I#EB#B8IJH<6EAC#)#B#>D<FC#>?(#@##D>(2A##<,
+@NC_003198.1-2/1
+ACAACATCCATGAACCGCATCAGCACCACCACCATTACCACCATCACCATTACCACAGGTAACTGTGCGGGCCGACGCGTACAGGAAACACCGAACAGAG
++
+@@@+FFFFHFFF)JJAJIJJI@+IJGJJIJJ?GDAJ#<JJGA?GJ8IIIFGDHHJGJHBGG8I#CJJC)H@D#C##CDD@7>DDED>D@CA#D9##5#C>