--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_003198.1_simulated_R2.fastq	Wed Oct 16 16:57:55 2019 -0400
@@ -0,0 +1,180 @@
+@NC_003198.1-90/2
+TTTCGCGGGGGCGGAAAGTACGGTCTCGACCTGCCCTTGCTTGGAATAGCTTTCCAGAATATCGGTAACAAGCGAAAACCATTCTGCATTTGACCCTGAT
++
+=@CAFDF+CHFFHHHEI,IEJJGJH#G#HIJJDI?9B??H#I3IBI*(JIDHI#HD&9DI#@HC#!E@;I!>D###H:#E#DCFD9>HADDB#A##@CAC
+@NC_003198.1-88/2
+GTGATTTCTGGTCGAAAAGAAAGCTCGCACTGGCCATGTGCGGGCTTTTTTCTGTGTGTCCTGGTCGCGCCACCATGCACAGGTAGCTCTGGTAATGGTG
++
+@:BFA!C0HFDHFJCBHJ#+<JJC#HJJHJE;##JF#?GIIJB0JHEGFFFHEE#F#!EHJJJ##ID#+#FI####ECC>#:#CD##D#CC#CC3CADCC
+@NC_003198.1-86/2
+TTTTTCGGACCTGCTCGCAGGACTTGCCAGCGCGGAGTCTGGATTCCCGCTTGCAAGGTTAGAATTGGTTGCCCAACAACTATGCTCGTGGATCACACTT
++
+CB1DFF!D?A8HHJFBI#JIAD@E9CI#F*JCIJ#GJ#J#@##8JFFFFE*HID;#IJ#=#!GI!FCIF?##@#).DDD##EH#:#####>(####CB#?
+@NC_003198.1-84/2
+CTGCCAAGTCCTGCGAGCAGGTAAGAAAAAATACGTTCGGCATCGCTGATATTCCGCAAAGCATGCTGGCGGGCGATAGTTTTTTCTATAATCGCCATCA
++
+@?+!DFFF<HCHHBCJHFJJHA#B#CJGIDE?HF@<D3<GJGEGJICF3BCHGF#HJ#;GCGJ##+=D@C#;#CGH;7@BCF59@<!9>#EDDDD###B<
+@NC_003198.1-82/2
+ATGCAGAACGTTTTCTGCGCGTTGCCGATATTCTGGAAGGCAATTCCAGGCAAGGGCAGGTAGCAACCGTAGTGTCCGCCCCCGCGAGAATTCCGAACCA
++
+@@BFFDDFFHGHHIHHDGI#HIEI>IGIGJ#0DI*DCI0JGIJ=FEJIJGHF?@<F#I;FI=H)#ID@DF:#B#>IC(DBDD##H<C##DCF#:###C@C
+@NC_003198.1-80/2
+GCCCCCGCGAAAATTACCAACCATCTGGCGGCGATGATTGAAAAAACTATCGGCGGCCAGGATGCTTTGCCGAATCTCAGCGATCCCGATAGTAATTTTT
++
+BB@ADD<FHH@HH<:#FGI#?J3G<GI#!?IIJ?9DIDDIJHDIIGI='D<BCDJGJGGJJDHIHJ=C@E5?;D##3F>?;CDD#D=#>#!:AD#(C@D'
+@NC_003198.1-78/2
+AATACGTTTGTCCTCGCTGTTATTCGGCAAAGCCTCCTGGCCGCCGATAGTTTTTTCAATAATCGCCACAAGAGTGTTAGTAAGTGTAGAGGGGGCGGCA
++
+@B<FFDDD!H!H#AJDIJH#?A*:GJJFJGJCC#B)GJGGFG?GJ9JG#DF;HID@GCIE#GIAH6C=##HCE##C>J#>@DC#C#@#@,C@EBDCD:#D
+@NC_003198.1-76/2
+AGGAGTCCCGCCATAATCGCGATCGACATTTTTTAGCCACGGCAACTCAGCGCAGCGTTGATGCTATCCGGGCACTGACCCAGCAGGCTTATACCGTGCA
++
+BC@FFDEFFHDHH)I@1IAIJHHJ3@JJEJJ)HC!FJH@CGH??I!GIHICFB#FECBBI8AJIGJ@EDDJ#95AI5IEHD9C#?#CD@#CC>CB#BDC'
+@NC_003198.1-74/2
+TGTTCGACAACCATTCTGGTCCGTGAAAGCGGGAATCCCGGCTACGCGCAGGCACGTCCCGCGACCAGCTCGGAAAAACTACATTTGGCATTGATGATCT
++
+=C@F=?2D#:H<:JJ!I!##JG+H<#;)GFJID:HHFIJFJGI#GF#<F#>BGC#ID8J#HII##CGD.E##<E#F26#D>>#HD#D#<D0#C##CAD#C
+@NC_003198.1-72/2
+CGGAATGTGATCAATGTAAAAACTTATTGACTTAGGCGGTCAGATACTTTAACCGATATAGGAATACAAGACGAACAAATGATACTGGCAGAATACACGA
++
+;@C4=?+D,FHFFJJ#<HIIJ@#JJGEJDHJGJII@JJJ#?HGIGGJI9GB.ID#IJFIB;GJ9CGDBD@CG##DCDA;G#D#F#3D#DBB##A9C#D#D
+@NC_003198.1-70/2
+TGAACAGTGCGGGCTTTTTTTTCGACCAGACATCCCGAGTTAACAACCATGCGAGTGTTGAAGTTCGGCGGTCCACCAGTGGGAAATGCAGATCGTTGTC
++
+1CBDF8F#AFHAHJJHCAEEJ+JJJGGDFG#GFI#DJIE#?9D>5?JFF;IBAJBAEJHJDHDJCD@>;GBC!FE##DDCEC#(B?C#::HD#@CB##D'
+@NC_003198.1-68/2
+TTAGCGAATTCTTGTTCGACAACCATTTTCAACCGTGCAAGCGGGAATCCCGGCTGCTCGCTGGCAAGACCTGCCAGCAGGACAGAAAAAATACGTTCGG
++
+C#?FDFF>H:HHHGIJHJJCH>GIEGJ@IIGIIJE?IEFEGD>BJJ0FJ#HEBB@IJ##FJG>GDGJ7#AEFGH#DF;5D@#<D@CB<DCFC9+>D#9#'
+@NC_003198.1-66/2
+TTGCCTGGAATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGATCTGCATTTACTACTGGTGTACGGCCGAACTCCAACACTCGCATTGTATTTACC
++
+<@84FFFFH>G#H@I+AIIFGHJE:IEA<<:EIBHF?G1?IIAGJ!H;IAF=IHH#B#CF@F!#JFE.#FBHCEBBE#DCA?D>#BA@CD#FA##?CCCD
+@NC_003198.1-64/2
+GCAAATGCAGAACGTTTTATGCGTGTTGCCGATATTCTGGAAAGCAATTACAGGCAAGGGCAGGTAGCGACCGTACCTTTCGCCCCCGCGAAACTTAACA
++
+BBCB=2DFHAFGCDII?C#JDJ<+JIJGJI?IG??IDIIBJ9J?GG#IJ#G=JJCIG=@G#FCGIGC;@6D>ACCJ#CD!DA5C@C>#ECC#:#C#D#@'
+@NC_003198.1-62/2
+TCCGCCCCCGCGAAAATTACCAACCATCTGGTTGCGATGATTGAGCAAACTATCGGCGGCCAGGATCCTTTGCCGAATATCAGCGATGCCGAACATAGAC
++
+:C1DBFFDHAFAHJGJGHJ33ID#JCG?I#EJ#GFFD@J?GCGD*#BIG?HHJ;IJFC7@DG8D)F!DJHHC.@I?@=##CGDC#CBD#D#C?8#C###'
+@NC_003198.1-60/2
+ACTTAGGCGGGCAGATCCTTTGACCAATAGAGGAATACAAGACAGACAAATAAAAATGACACAGTACACAAGATGGGTGACCCGCATCAGCACCACCGCC
++
+CC@BDFFF#HGHBIFI#GG#J!JDJHJGE#EDJJICII)JHIFJEJIED=D@=CH<JFICF.IC#EHIBIF#D.###ECC##F>BCCA#>DDBC#C:#BD
+@NC_003198.1-58/2
+ATATCAGAGATGCCGAACGTATTTTTTCTAAGCTTCTCGCAGGACTTGCTATCGCGCAGCCGGAATTCCCTCTTGTAGGGTTGCGAATGATTGTCGAACC
++
+@?C+FDF#:HFHDJ:F:JACCIGCG@AJF#@#@41?G)?I#IIDIJJJI#9#IICD#H@FHFF#HH=AID#I>F>#D##A<3B)#FC#C#C>C7??#CD!
+@NC_003198.1-56/2
+GTTGGTAATTTTCGCGGGGGGGGAAAGTACAGTCGCTACCTGCCCTTGCCTGGAGTTGCTTTCCAGGATACCGGGAACATGCACAAAACGTTCTGCATCT
++
+@C@BBFDB:HDCH2IJAJCH#IIH+II@IH#FGEJJCC?GCGJAIG*JFEEF8>(@JJFIFG;####CC>#HHH#DB=C!D#B#@D<>CE#2C>>CA@#'
+@NC_003198.1-54/2
+GTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCATTGATGTACCGCCGAACTTCAACACTCGCAAGGTTATTACCACGTGATCTCGTG
++
+#?CFAADFGEHHB+?JHJHHJI+6HG0J<9E=ED#IIGH@JC#>F@###GF#AI;JBBJFEBIJHIGCBAF@FFD9#D<57!;CDBC#EBC@EB@C>##D
+@NC_003198.1-52/2
+CGGCTGCGCGCTGGCATGTCCTGCGAGCAGGTCAGAAAGGATACGTTCAGCATCGCTGAGATTAGCCAAAGCGTCCTTGCCGCGGATAGGTGATTACAAC
++
+CCC4#)DDFEAHH@I#+FGIEFCIIJHEFIGCGFGGG*##FBI*GG6H!HBC0I(IHI>+DID#<#DH;EHF!DHC8#58EDD#ADD#C#>#!E###D#9
+@NC_003198.1-50/2
+GGCTGACGCGTACCGGAACCACATTCAATAGCCCGCACCTTAACAGTGCGTGATTATTTGTCGACCAGAGACCACGTGGTAACAACCATGCCAGTGATGA
++
+@@?DFF<;DHHFH#J+G.#I4?J##+AG#GBFJH)IC@JI#I?HI?IACI!F#JG##JF#CJECDF#IJ#D#FHDC#BFC6E#:DD>DCED#D>B<#C#'
+@NC_003198.1-48/2
+ACGCGCCTCCAGGAGTCCCGCGATAATCGCGCTCGACATTTTTTCTCCACGGCAAATCAGCGCGGAGTTGATGCTATCCGGGCATTGACCCATCAGGCTT
++
+=CCD4DDFBEHG?JE#+CG9?#1J2H:IJHC#HBGJI#I#FIHIG!IGA>GFAJDEFG,DAEE#I#IE;EFF?@BG?3BDB89D#D<D?A(D#DD##CC'
+@NC_003198.1-46/2
+TTGTTGCAAGAGATCATAACAGGGTATATTGATTGATAATAAAGATATCACCAGCAGCACATGAACAAGTTTCGGAATGTGACCAATTTAAAAATTTATT
++
+C#@=:FFFDHBDHJH<J:J>IHHE#A#IIDJHECJH#IHFDJI#JC<IF#J>GGHHIIBG(=@EF?8F#H#BFJBD>DAFD@#@#E#DCAADDD??#C#'
+@NC_003198.1-44/2
+TCGCGACCTGCCATTGCATGGAATTGCTTTCCAGTATATCGGCAGCACGCAGAGAACTTTCTGCACTTGCGAGTGTTGTACAGCCGAACGTCAACACTCG
++
+CBCF#F?FHH8H#EBGE#J#CJGJJE<I@IJ2GI*GGCFB@HAA#GIDGHDIG#IGE#BII>JB##JFBA#E#?##IFBCC#B##>DC@#>:@<CB?C#D
+@NC_003198.1-42/2
+CCTCCGAGCAGGTCAGAAAACATACGTTCGGCATCGATGATATTCGGCAAAGCATGCTTACCGCCGATTGTTTATTCACTCACCGCTCCGACATGGTTGG
++
+@CC#4DADH#H?HJIGII<C)GIIFJIJHIG>ID?J!G9JGJ*EJJJGG'IGGHE#D=###E@HJEDI#GHFE!)CF##B:##FDC##F#8!CCCB#5@:
+@NC_003198.1-40/2
+CATTCGAATGTCGAAGGTCGGAGGTACATCAGTGGCAAATGCAGAATGGTTTCTGCATATTGCCTATATCCAGGAAAGCAATACCAGGGTAGGGCACATA
++
+B?C!FF=#HCH#HHH<#JICD!GIJIGEHI#DJ#EJJGJHJJHID?#D#IGDI=3H#H#GC##@#D9J##D##3FABFFCCD#@F3#H!#C>:CC@##>:
+@NC_003198.1-38/2
+GTGATCAATTTAAAAATTTAGTGACTTAGGCGGGCAGATACTTTATCCAATATAGGAGTACAAGACAGACAAATAAAAATAACAGAGTAAACAACGGTCA
++
+BBB4D=D:HEH#DHID,CJH!HJI+AJ>GJH:G?C*FJAB99CGI#JJDJCCDD4GI#I<JCCDGHF#EJCH(HAJI>F?0?DDD#5C##D#A9A###>D
+@NC_003198.1-36/2
+TGGTTGTTACCTCGTGATCTCTGGTCGAAAAAAAAGCCCGCACTGCTCATGAGCGGTCTTTTTTCTGTGTTTCCTGTACGCGTCCGCAAGCATCTTTCCC
++
+B?BDACED2?;DH)JDJG0HGHAIJJGIE@H;GAIJID@JGF8GG#JBG#I#G9ID#C?EHJH=5D2IICFCII#B#HECHDDB#B##!:CC#>#?E#;D
+@NC_003198.1-34/2
+AAATATATCGCCAACAGCACATGAACAAGTTTCGGAAGGTGATCAACTTAAAAATTTAAAGACTTAGGCGGGCAGATACTTTAACCAATATAGGGATACA
++
++C+DFC;FH+#1G#HAJJIDH#JHJCJGBFDCFFJBJ#JH*JII#B!J'H@GH@?GH>##HDB8J=DH@CBCC57CC8CDGF@C(D5E#>EDD:#DCAC'
+@NC_003198.1-32/2
+ATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAATCAATTCCAAGCAGGGGCAGGTAGCGAGCGTACTTTCCACTCCCGCGAAAGACACCAACCA
++
+BC@D=D=DHEHGGJHI+J+GJDJICJCI?I*#GIHJ9JD!??GJ08G>#HHI#GFCFJ#IG;I>JD##?D#DGEA#H!9!D#EDD@#3;###@D:>>@AC
+@NC_003198.1-30/2
+AGGCTGATACCATGCAAAACCTGTTAGATCTGAGCGAATTCTTGTTCGACAACCATTTTCACGCGTGCAAGCGGGAATCCCGGCTGCTCGATGACAAGCC
++
+@?B#BFFA4EAHHGJCJIIH#>G#3!>EGI04#J9FHJIIBJFJFE@?4#I8?D?DDEJJA##BI@HD>D>DCFD#8H=A#/C;CGD#AC#DC##BB##D
+@NC_003198.1-28/2
+CACGCGCCTCCAGGTGTCCCGCCATGATAGGGATCGAACTATTTTCGCCACGGCCAATCAGCCCGGCGTTGATGCTATACGGGTACTGACCCAGGAGGCC
++
+B=1DFFFED2<B6I#,IG3F?IJH?#JG#G#JI)CGJ!#B(@G?#HCI8F9C20#D8JJ=EJ#=#DH#CI@D.JH2D;!EE05#?;@C->DD<##@AD@'
+@NC_003198.1-26/2
+TTTTTGCGACCATAGATCACGAGGTAACAACCATGCGAGTGTTGAAGTTCGCCGGTACATCAGTGGCAAATACAGAACGTTTCCTGCGTGTTGCCAATAT
++
+?BCAF)F2DGH<#JICG@JJH#0?AG#@JI/AFJI@#GDD0BG;:?GIFCG#EICICD#B/4GG(BJ3J@D#E(?IAGDH;@#D6ACCFC##DDD##D#'
+@NC_003198.1-24/2
+GAAACACAGAAAAAAGCCCGCACCTGAGCAATGCGGGCTTTTTTTTCGACCAAAGATCACGAGGTAAGAACCATCCGAGTATTGTAGTTCGGCGGTACCT
++
+@BBDBFF+HH?HDGIJ<IJIEGJAH#I!FH#J?IGIHGIGCJ9IFJGHFGBI#@8HCJHJEHIID@D#H;E5;H!EECA8#E#,#?EB;C@D>0CDC##@
+@NC_003198.1-22/2
+CTATCGGCGGCCAGGATGCTTTGCCGAATATCAGCGGCGCCGAACGTAATTAATCTGACCTGATCGCAGGACCTGCTAGTCCGTAGTCGGGATTCCCGCA
++
+B?@4DFDFA?CDH@JJIGJIJAHEIHJIDEH<I9E1#!*B;FIJIGID#H3!!IDIE=FJG<#BCDDDDEGF#CDG#A<0#B1#>C!DFBDCDD#3>BD'
+@NC_003198.1-20/2
+AATCGCGATAGACATGCTTTCGCCACGGCAAATCAGCGCCAGGTTGATGCTATGCGGAGACTGACCCAGCAGGTTGATACCATGCAAAACATCTTTGTTC
++
++@BFDFFFH#C++C>##JIBIIC#J<#FC)GDF9:J*JI!#!##B@#C;IGJG##G:##F3FJFH'DJ#9I#9#9C>?IC(CCDCC?EC@AD#@BDC#DD
+@NC_003198.1-18/2
+CCCTTGCATGGAATTGCTTTCGAGGATATCGGCAACACGGAGAAAACGTTTTGCATTTGCCTCTGATGTACCGCCGAACGTCAACACTCTCATGGTTGGT
++
+?@CFD>C#HHFHHGFHFJJH##JJ#JFIJJD?@*#JCCJ#@FJ?JBJD:I!;II1JGGHFG#IJ=JIE;IED@DF?HDE#CD@@CC?:4#DD:DDCCD#'
+@NC_003198.1-16/2
+TCGTGCAAGCGGGAATCTCGGCTGCGCGCTGGCAAGTCCTGCGTGCCGTTCAGTAAAAATCCGTTCGGCATCGCTGATATGCGCCAAAGCATCCTGGGAG
++
+#@@FF=DDBCGGHHI#A#GC3A?I#IHJIGJIJ?GHF##ICGB#:J#F#GH-I#JJIGJE#H@##IFCIE5;=C>CCB#C#ED#FCFD9D6?CC@C@##>
+@NC_003198.1-14/2
+CGTTGATGCTAACCGGCCGCTGACCGAGCAGGCGGATACCATGCGAAGCTAGTTTGATCTGAGCGCATTCTTGTTAGATAACCATTTTCCCCCGTGTACG
++
+?B@DF?CDFH2#:H#J#I!JHGJJG!IEJCG?**JIC?BJ#EJ2####H##=GJ8)JJGI@##D=#=E>DC>#BC#BC##D)@3#C?#C#!###@?#D#@
+@NC_003198.1-12/2
+TCTTGTTCGACACCCATTTTCACCCGTGCAAGCGGGAATCCCGGCGGCGCGCTGGCAAGTCCTGCGAGCAGGCCATAAAAAATATGTTCTGCATCGGTGA
++
+@BC++DDBDEHG#GJI<<I3JC!IIBG1*H#ICJIF?EIHIF;JJ#G4@6?/FAJ5GDAH#CDC;>IDFE(C#A@#CH>E#D#C#FDC?#>ACDFD#D>D
+@NC_003198.1-10/2
+CGCATGGTTGTTACCTCGTGTTCTCTGGTCGACAAAAAAGCCCGCACTGTTCAGGTGAGGGCTTTTTTGGGTGTATCCTGTATACGTCAGCCCGCAACGT
++
+@@CBDF?FHF>H<JHC?JJC#EGIG)GJGGH:#GHHDJGBCI@GHJJJII5H;HFII#GBH<EHH8C)#!CCEF#@DG;@DB###DDFD?;ACD8@#CC'
+@NC_003198.1-8/2
+CAGGACATTCCAGCGCGCAGCCGGGATTCCCGCTTGCACGGTTGAAAATGGTTGTCTGACCAGAATTCGCTCAGACTAAGCATGTTTTACAGGATATGAG
++
+#BB+BC#F2HHF3I=JEEJGAAIGI;BGCJHCG@F#HGIIFG@G?FGHJC63HIHC##JC!FHEI<EDG>=7GDF##@D#EH-BDFEE!D>!A#B>?#D'
+@NC_003198.1-6/2
+TCGCCGGCAGCACATGAACAAGTTTCCGCATCTGTTCCATTAAAAAATTTATAGACTTAGGCGGGCAGATACTTCAACGCTTAGACGAATACAAGCCTCG
++
+CCC+D##FAF<DC,IAJGIC,?GJEF#I#HH#GF##G#JIG#0J7I#(CICE#JDDDE=D#JDGBEGIEDE5EF#HD6###BC#A#CEBD?CDE>#A##'
+@NC_003198.1-4/2
+AACCGCATCAGCACCACCACCATTACCAACATCTCCATTACCCCAGGTAACGGTGCAGGCTGACGCGTACAGGAAACACAGACACAACGCCGCACCTCTA
++
+@+BF4FFFHAD<<JBG?GHIGJGJ#ID)#IEEI(BJJBHJGJ#IJD?#JJGBHA>I#GI)C=F<BJ7@;H;HH@DEEHFDEC#C!>:###9A@DDDD##'
+@NC_003198.1-2/2
+ATTGTTTTTTCAATCATCGCCACCAGATGGTTGGTCATTTTCGCGGGGGCGCAAACTACGGTAGCTACCTTCCCTTGCCTGGAACCGATTTCCAGTAAAT
++
+C#!+D+*<HHF##@JJJ4JBIADHGFIJGF?GF?G#CH:9EI>FJ#EJ9=8#FGG##CJFI.#ACFBH=D!E?55>;D3BHABA##C#BAC?CDD#?#EC