--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_011750.1_simulated_R1.fastq	Wed Oct 16 16:57:55 2019 -0400
@@ -0,0 +1,180 @@
+@NC_011750.1-90/1
+TAAAATTTTATTGACTTAGGTCACTAAATACTTTAAGCAATATAGGCATAGCGCATAGACAGATAAAAATTATAGAGTGCACCACATCCATGTAACCCAT
++
+CB@D#FFDFBHFDJHJJIEHJJIFIJGJFIJ#?EG?#DGFGCII0?FJJIDIGJ*#GEIJ#IJ?)BC5EHD##>F8A;#@FA#A>;BDD>DD#C#8#@?C
+@NC_011750.1-88/1
+TGGCGCAACTGAAAACTATCGTCGATCAGGAATTCGCCCAAATAAAACATATCCTGCATGGCACTAGTTTGTTGGGGCAGTGCCCGGATAGCAGCAACGC
++
+CC1FFFF=D2D+HGIHJ#3JFIIAIIAIGJJFEJ#JGJJIJ?IIGC@BDB#HIHIB<JJGHGJ#DJHIHFCEH8A@BCDEFDBD>;FA5D#DA#D#FCDC
+@NC_011750.1-86/1
+CTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCAAGCGAGTGTTGACGTTCGGCGGTACATCGGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGA
++
+5C>FAFAFHD<FHGJFIJJIJHH,JJIJJJJJI6IJ#JIJ#IFI#/JI#JDJDI#=HH#DFJ?7#II#FD#E>CA=C@#D<@DC#DDD>D:DDA#D?ED,
+@NC_011750.1-84/1
+GAAAACGTTCTGCATTTGCCACTGATGTACCACCGAACTTCAACACTCGCCTGGTAGTTACCTCGTTACCGTTGGTCGAAAAAAAAGGCCGCACTGTCAG
++
+@C=DFDFFFHGDCGEIIIJD?#JAIIDBHJ?#JEGGIBFJIJ=J>FGIJD##DI?!EE=JBBJ#FBD=DI#?E;<FCDDC#DDACD@#>CECDDCB53DD
+@NC_011750.1-82/1
+TGCTTTACCCAATATCAGCGATGCCGCACGTATTTTTGCCGAACTTCCGACGTGACTCGCCGCTGCCCAACCGGGCTTCCGGCTGGCGCAACTGAATACT
++
+@@?A#FDDHGHF<>JJ4GAIIICCD0###EEIIHIIJ#JHGJJHJIB#'FHH#IJCJJCJ8GEG7??-?>EF(C?#;C7?#DH#CDABDDAD?DBA#DC@
+@NC_011750.1-80/1
+TGGCGCAACTGAAAACTTTCGTCGATCAGGAATTTGCCCAAATAAAACATGTCCTGCATGGCATTTGTTTGGTGGGCCAGTACCTGGATAGCATCTACGC
++
+@C=DFEFFDHHHH#CHEEIICIJHJJJJ#JGGGHJFJIJBED=?DEIHH>BJI#CGIBEI#I>DC#HBGED)HE?:##ED5#CE#EAE2EC5DDC##BAC
+@NC_011750.1-78/1
+GTCCCGTCAGAAGTTCGGCAAAAATACGTTCGGCATTGCTGACATTGGGTAAAGCATCCTGGCTGCTTGTGGTTTGTTCAATCATCTCCACCATGTGAAT
++
+@@CFFFFFFHHH#JJJIJJHJHFAJJI#J#I:HIJG#JBGH@#H3JEII@?IIFIHBFH9EC@#J=D##FCEIC;#@CD4EFECAD#D3DDC8#C+>##@
+@NC_011750.1-76/1
+GCAGAACTTCAACACTCGCATGGTTGTTAACTCGTTACCTTTGGTCGAAATAAGAGCCCGCACTGTAGGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGC
++
+C?!DD#;FC7FHAHI2JJEI=HJ?IIJJI#HICHJGHJ8IJGI;JD@H*FB@J#CGI@EBA#JEEG##E#GDCCE?DHJFA<#>>AD#C>?E>8AD#ADB
+@NC_011750.1-74/1
+AGAACGTTTTCTGCGTGTTGCCGATATTCTGCAAAGTAATGCCGGGCAGGGGGAGGTGGGCATCGTGCTCCCTGCCCCCGCGATAATCACCATCCACCTG
++
+??CFFDF1HFH<FBJ?IIGDEIJHGI;IJ)J#DIHJ)AJHIHI!ID:DJGHB#GIC=I##JH#<CE#CGI#@CD@7HBCHH)9#DF?ED?ED##DABD#3
+@NC_011750.1-72/1
+TGCCAGGCAGGGGCAAGTGGCCACCGTCGTCTCTGCCCCCGCCAAAACCACCAACCAGCTGGGGGCGATCATTTAGAAAAACATTAGCGGCCAGGGTGCT
++
+@+@DD?FFHHHHGIA#E?IGHBJIJG9I#GJHGBJIEJH#E@IIIJJ#JFFEH3JEF#JFDI#I(IDCE#CJ>#E#FC(E#C;CD:#,>#CDDCC#B#?,
+@NC_011750.1-70/1
+ATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGAAGCTTCTGCACTGGTTCCCTTACGCGAGTAAAGTAAAATGTTATTGGCGTAGTTCTCAAA
++
+CCCFFBFFHA@HCJIHJGGGBJJJJJIJFA1>J#IHBAD#FG#HAH#@#FH@BC1##IJD!#FH#7@?AD@E!A>:I@B#D#;#??#A##D##@D#B#?D
+@NC_011750.1-68/1
+CCGCTAATGGTTTTTTCAATCACCGCCACCAGGTGGTTGGTGATTTTGGTGGGGGCAGAGAGGACGGCGGCCACCCGCCCCTACCTGGCATGGCTTTCCA
++
+@CCDFFEDHDHH=#EIIJIJHH#JJIB:EGJIFI096HGJIEFJFIGJE#JIGJIBHJDJCBFGJGH#;?HID;E#F>I=@F#EDD5BDC@#D#DDCCDD
+@NC_011750.1-66/1
+CTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTCGACCAAAGGTGACGAGGTAACAACCATGAGAGTGTTGAAGT
++
+@@@FF+FFHFHHHIJ<JFIIJI@CGIJ*JJGEGIJCIGJGJI>I?/IJECGEJHHB;FC(EHCJD?5;F#EDEF=EH#D?@<D>E>C#DF#>CB5#D??A
+@NC_011750.1-64/1
+AAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACGATTACCACCACCATCACCAGTACCACAGGTAACGGTGTGTGGTGACGCGTTTTG
++
+?@CDDDFADH?HHJG#JBGJ@BJJAJHEGJIIFGJIIIJJBJIJI##IAEHDGCAIBH#HGFAJJ#GFHDD#D;#;=#GCBCE#D#D#DDDA>#@<###,
+@NC_011750.1-62/1
+TCAACACTCGCATGGTTGTTGCCTCGTTACCTTTGGTCGAAAAAAAAGCCCGGACTGTCAGGTGCGGGCTTCTTTCTGTGTTTCCTGTACGTGTCACTCC
++
+C@+FFFFD<?HFGIHFCFFI#GGIJFH#CJIBAIIJ?HFCIJH.G)EIEIAF#H#JJFJ)CFBE=JDBCIE#F;9=>C#D=>#?E,;DC5D#D,BE##<C
+@NC_011750.1-60/1
+GTGTGGATTAAAGAATGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGCAAATTAACATTTTACTTACTTAGATCACTAAATAGTGTACC
++
+B@?=DFFFHHHD#JJ#IEJGJJHHJI1IBI?JJGJ?CJ:JJIAJEJJJ?HCJHICDAD#EJ>AIF>!I7#GJE#F#HD#.>@#E#A;@D>DDB#C#@C#B
+@NC_011750.1-58/1
+CTCAGTAATATCGACGGTAGATTCGAGGTAATGCCCCACTGCGACCAGTTTTTCGACAGTATCGATAACGGTAACGTTGTGACCGCGCGCTTTTAATACG
++
+@@@F8#FFHDHDH#GGJJIHHECIJFIJ?@JGICJICJFJ:##J#F?JEIFIJHCIJ#H#;DEHGDCI@GFCHF>G8BFC2>A#EDEDDCED#@CCD#C,
+@NC_011750.1-56/1
+GTTTTTCGACCGGATCGATAACGGTAACGTTGTGACCGGGCGCTTCTAATACGCCGGCCATAATGGCGGTCGACATTTGCTCGCCACGGCAAATCAGGGC
++
+@@CAFDFBCHFHDEFH?EIJIJJJI#JJ>JIHBGIJIG!JAFIGI#JIBGGJGDH3DEIF<C#CHG;D#:C@D3E;4D#A:C?DE#D;ACDC#D#DA#?B
+@NC_011750.1-54/1
+CACCACCATTACCAACACCATCGCCATTACCACAGGAAACGGTTCGGGCTGATGCGTACAGGAAACACAGAAAAAAGCCCGCTCCGGGCAGTGCGGGCTT
++
+CC@=FFFF7FHHHI#IJIAHJB#HJGDFEJIDH#FC#JJ)?JJ#HJIFHJJH#J#JBB;G5IIGI=IH#II<GG=@EHFBDD#DD#C#ADCCCA6AC#<C
+@NC_011750.1-52/1
+GTTGTGACCGCGCGCTTTTAATACGCCGGCCATAATGGCGATCAACATTTTCTCGCCACGGTAAATCAGTGCAGCGTTGATGCTATCCGGGTACTACCCC
++
+@C?@FFDDHHHG?HGJJ#IIAJI?JJIJFFJJ?6JJIFGFJ0J#HAJBBGJFBGG?B>7GE#DG-CFHH#5F.JFC:DHB=FFCABDDCD?#DDD#:AD,
+@NC_011750.1-50/1
+TTTCATTCTGACTGCAACGGGCAATATGTCTCTGTTTGGATTAAACAAAGAGTGTCTGATAACAGCTTCGGAACTGGTTACCTGCCGTGGGTCAGTTAAA
++
+CCCF;2FFGHHHHJGJHJH?GFEGIDFJI9JIJGH#GGJJBGI>D#9I#HJEJ:IED/>J>#D;CJ>IB#FDCBFEAHDCCCEBDCD#D##E#B#AA>>D
+@NC_011750.1-48/1
+CACGGCAAATCAGCACAGCGTTGATGCTATCCGGGCACTGCCCCAACAAACTAATGCCATGCAGGACCTGTGTTATTTGGGCATACTCCTGATCGACTAA
++
++1@DFDFF+?HHG<#IHJBJJIJJB>JBGHJGH<IEGBJGFIAJJAFCJHJIBIDEJCGBIDHBFDF#FDC#?EH(H>AGFAD#5#C#@3@0C#B8C#68
+@NC_011750.1-46/1
+CCACGGCAAATCAGCGCAGCGTTGATGCTATCCGGGCACTGCCCCATCAAACTAATGCCATGCAGGACATGTTTAATTTGGGCGAGTTCCTGAGAGACGA
++
+@@@FDF?DH?FHCJJ:EGH:GJJJJ<GEE#JJF<HIIIJ?IBJJJI#=9GBGC#E>:IEDIA<=CGH#BE>5G=(D#:H6D8D#;#;@FDDD###@CDB,
+@NC_011750.1-44/1
+TTGCCGAACTTCTGACGGGACTCGCCGCTGCCCAACCGGGATTCCCGCTGGCGCAGCTGAAAACTCTCGTCGCTCAGTAATTTGCCCGAATAAAACATGT
++
+BC@DFF<FFHHDHJJJJBJGIGJJJIJG<HHICJ##I8J36JFJI9JGCIJJ5HG#@DECJJ#=I#=E:4E>##>C9#>CF7@#DF##@CA>AAB>BCEC
+@NC_011750.1-42/1
+CCACGGCAAAACAGCGCAGCGTTGATGCTATCCGCGCACTGCCCCAGCGAACTAATGCCATGTAGAACATGTTTTATTTGGGCAAATTCCTGATCGACGA
++
+@C@FFFBFHH#BHIIDIE9CIIIIIJ?FEC1IJI#IGC@J8A8JJI#E#=HII@C?<EFEHF#F9#?EACDBDD>AA@GCCC5:DBAEFE?CB@:CAB9D
+@NC_011750.1-40/1
+TGGCCACCGTCCTCTCTGCCCCCGCCATAATCACCAACCACCTGGTGGCGAAGATTGAAAAAACCATTAGCCGGCAGGATGCTTAAGGCAATAACAGCGA
++
+C?CDFADFADH:GCJH;IHJ>JICHGJ#J9DIDBJJFBJHGJHJ#FF<JJJ#HHB8##;H5DCCFCBJE@C#9##;ABAB?@CF#D##D;DFC#>;AC8,
+@NC_011750.1-38/1
+GGTTACCTGCCGTGATTAAATTAAAATATTATTGACTTAGGTCACTAAAGACTTTTACCAATATAGGCATAGCGTACCGCAAGACAAAAATTACAGCATA
++
+;@CFFFF23HFFCJG#DG?IGHJJI:H#JJAJ?7EI#JJ3I>GJJJJ9B#IHFHD#IJ#EH@AIBEFBDCC=DJ#AE#D##@CC##CDDC:CDBB5##CC
+@NC_011750.1-36/1
+GAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGGACGTATTTTTGCCGAACTGCTCATGGGGCTAGCTGCTGCCCAACCTGGAT
++
+@C?FFF?FFHFHHGGGGHJIBJIJJH)?J:GHIIDFIGDJJIGJJJ?ED#JGJGFIJGJJGBCBJFFD#JD#D#GBG#H<#ED#A=D@DD=B#CD#>AC>
+@NC_011750.1-34/1
+TTCTCGCCACGGCAAATCAGCGCAGCGTTGATGGTATCCGGGCACTGCCCCAACAAACTAATGCCATGCAGGATATGTTTTATTTGGGCAAACGCCTGAT
++
+@@@?F+DFHHA8+JJJIJJJGJI2EJJJI#I#H#?F#GDIFGIG?G=JCJIIGBII:IIHIEH?DJEDCI<G@#=ABA@E>#CEA<DC#B=D###A#C#@
+@NC_011750.1-32/1
+GTATTTTTGCCGAACTTCTGACGGGACTCGCCGCTGCCCAACCGGGATTCCCGCTGGCGCAACTGAATACTTTCGTCGATCAGGACTTTGCCCAAATTAA
++
+?C?FFF,FCHFHH@G?IBEDI>JJJJJIIGIJCJG?HHJIFAH?EJCJ?G0JIJGGGF+7JHI=EBB#H;G;B@AD@DDC=DAFD#B<CC@B>:CDC#D@
+@NC_011750.1-30/1
+TGCCCCACTGCCAGCAGTTTTTCGACCGGATCGATAACGGTAACGTTGTGACCGCGCGCTTCTAATACGCCGGCCATAATGGCGCTCGACATTTTATCGC
++
+@C=FFFFFFGHBDIIJJGI?IG,JFCHJJ#JFIJ;IHIHJ@E*FJHEIJJJGBJ>G4GE#G@D@<EIF?BDCEDHB=>?;<(DC#E#(CC:#DC@#19CA
+@NC_011750.1-28/1
+AAAAAAGAGTGTCCGATAGCAGCTTCTGAACTGGTTACCTGCCGCGAGTAAATTAAAATTTAATTGACTTAGGTCACTTAATACTTTAACCCATATAGGC
++
+@@CAFDFFHHFH<#FIAJAGFEJ=IJJIJJJFEIHI7#IHJJ3J#EG=AIGGJDHEAE74A'DFHJAIJJCGIDEHH>#;HCDEFA?:DA?#CDC?D#:C
+@NC_011750.1-26/1
+AATGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGACGAAGGCGGCCACCGTCCTCTCTGCCACCTCCAAAATATCCAACCACCCCGT
++
+=B#FDFAFDHGGBJF@JGIJIJJIHHIIGI0H<0#GIAJJIFFJCI###I!GEJ#JDGGI=GAAGAGCDFB;#F#?B#ACEA#:>##CDDAE>C9###AB
+@NC_011750.1-24/1
+CGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATTTCGGTAACACGCAGAAAACGTACTGCATTTGCCACTGATGTACCGCCTAACTTCACCCC
++
+CC?FFFFFH3HHHJJJJJH<IJ@IJJHGJJBIJG1GBJJI#IDII!GGJJHDIIJDHDIECJ#7C9EE.D?58DGECA@BAHD#DDB@#:D?4EBC###,
+@NC_011750.1-22/1
+TGATATTGGGTAAAGCATCCTGGCCGCTAATGGTTTTTTCAATCATCGCCACCAGGGGGTTCGTGATTTTGGCTGGGGCCGAGAGGACGGGGGCCACCTG
++
+#CBFFFDFH1HHF@GJJJE9GJEBBJIJJJGJJJCIGHDFHJ@J9HHJEJJIG;JI#FGID#FA#HICA=HI;#F>CA2#;#DD:DC<5(#C3CD0ADCD
+@NC_011750.1-20/1
+TAATGGCGATCGACATTTTCTCGCCACGGCAAATCCGAGCAGCGTTGATGCTATCGGGGTACTGCCCCAACAAACTAATGCCATGCAGCTCATGATTAAT
++
+?@CAFFFFFHHDHJJJ@EJDG@JIHAF@#J?CFJG#I#J#JIBIH'HIDFJIHJ=##F=#DC@H=FHJFEJD><@F?GDD@C@FBCFB##B@AD#C@#C,
+@NC_011750.1-18/1
+CGATGCCGAACGTATTTTTGACGAACTTCTGACGGGACTCCCCGCTGCCCCACCGGGATTCCCGCTGCCGCAACTAAAAACTATCGACGATCAGGAAGTT
++
+@@CDFFFF?G<HHJIIEJJ;#ACGJ2:F?JJI?HJ)BHJE#JJHIG:J@*#@BBG=CHFED@>FH:F#GC@F@;@#CBIFC##D>D#C@B#DD>ABA#B,
+@NC_011750.1-16/1
+GCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCCACAACCACCTGGTGGCGAGGATTGAAAAAACCATTAACGGCCAGGACGCAT
++
+BCCFFFDFFDAH>GIIICHGHIIDJEJJDJFJJJEIEHGIJICJJJHH##JGHGIFIFE#BIJ7G=G#G7EDFICCE#?F#>@DD#1CCCCDAC##DD#B
+@NC_011750.1-14/1
+GAAACACAGAAAAAAGCCCGCACCTGACAGTTCGGGCTTTTTTTTCGACCGAACGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGTCGGTACCAC
++
+@@@DDDAFHB+HF@JFIJH:IIJ?HH#JIHA#JHDCJG#II7)JBJ@JII#EA#GIEFG8JH<J?D78I<FC@GBBDDCC@CECCA>FED#DC:DDD##C
+@NC_011750.1-12/1
+CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTTCCATGAGTATATTAAAATTTTATTGACATTTGTCCCTAACTACTTCA
++
+;C>F-FFFDHHHHGJG?JJJJEJJJJJDAIGDGIJGGJ4IIJAID0#FJJ;G#ID#G8@IIH#@A#GGIHBDED:#D;CC#D##BB##C@D@#DC?D?#D
+@NC_011750.1-10/1
+TTCGAGGTAATGCCCCACTGCCAGCAGTTTTTCGACCGGATCGATAACGGTAACGTTGTTACCGCGCGCTTCTAATACGCCGGCCATCATAGCGATCGAC
++
+C<?F44FFHHHGHEHGIJHGIJJHJJGJJHIHIJDIJ1HJ#7@IEH9JCHDJD>B5=HI#)DFGAH@:IHJIJ3E>DF?#BDFDE9E#DD#E7CCBAEC>
+@NC_011750.1-8/1
+TTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGTGCACAGACAGATCAAAATTACAGAGTACACAACACCCATGAAACGCATTATCACCACC
++
+@CCFDFDEGHHHFFJI77CJ:HIJJJGIJI?GH3JJ)DBGJ#A=D8JF?#DBGJ.BIFJG(.#F=#C?AEF7DJ?H#5@>:DCDDDIB+E#;#3D:93BC
+@NC_011750.1-6/1
+ACTTGCCGCAATACGGCGGGTGGACTCAGCAATATCGACGGTAGATTCGAGGTAATGCCCCACTGCCAGAAGTTTTTCGATCGGATCGATAACGGTAACG
++
+BC@FF=FFHHDHHGDAJ>GIIIGGJGAJI?I@J)II?GFJ?IIIJJJJJCDHIHJG#0FG@<I#?DGCI#>#EHFCDDBD#E=DB8AC>E4C##C>B>D@
+@NC_011750.1-4/1
+TGCCACTGATGTACCACCGCACTTCAACACTCGCATGGTTGTTACCTCGTTACCTTTGGTCGGAAAACAAGCCAGCTCTGTCAGGTGCGGGCTTGTTTCT
++
+CC?FFDFFDF=HDI+#EJ>#IJH?JFDFJGDIDGE?JJI9@JJGGJGIJHIGE9H/EJDCCH#F8AG#7C4A@#GD#@BGH2B@>#BD#E#?C##D@CDC
+@NC_011750.1-2/1
+CCTGCCTGCCATTGCTTTCCAGAATATCGGTAACACGCAGAAAACGTTCTGCATTTGCCAGTGATGTACCGCCGAACTTCAACGCTCACATGGTTGTTAC
++
+@@CFF8FF#HHAHH7@JIBG@JIHJF2BFJ#IDIB@IIIIB@J;IJCGHGIIEB>/GABJ#BFBJHDED6@F@8H#(:BDD<B#CC)-EB##DC>CAD>,