--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_011750.1_simulated_R2.fastq	Wed Oct 16 16:57:55 2019 -0400
@@ -0,0 +1,180 @@
+@NC_011750.1-90/2
+ATCGGCAACACGCAGAAAACGTGCTGCGTTTGCCACTGTTGTACCGCCAAACTTCAACACTCGCTTGGTTGTTACCTCGTTACCGTTGGTCCAAAAAAAA
++
+?CCB=FFFHH2H<AAGGIC?#,#?J#G!GJIJJHA?CJ#?I0#JDCCJ#I04I7DH=JHIJDGJ#J5CI:FDAHCF7HE>D#CB##5@##5!AFDCE##D
+@NC_011750.1-88/2
+CAGCACCATGTGATCAGCCGGGATACGGCTTGCCGCAATACGGCGGGTGGACTAAGCTAGATACACGGTAGATTTGAGGTAAAGCCCCAATGCCATCAGT
++
+@@@ADFF,FFHD<E#GH#JJJ#IE#IE#EAJJICBB@0EJHC>JIABCB@9=A!HCH#D#C?##G@CJDIG);###?A?DDC##CCA:D!?(5@>#DDF:
+@NC_011750.1-86/2
+ACGAAAGTTTTCAGTTGCGCCAGCGGGAATCCCGGTTGGGCAGCGGCGAGTCCCCTCAGAAGTTCGGCAAAAATACGTTAGGGATCGAGGATATCGGAAA
++
+@1CFD?3<G8HHFGFI<AGG1IEJ?FIHEIIJJHIEJJHE#E?GJI;#JHF#C##HEIBJF#JCHFIEDC#EI<9F#BH!#C#CC#:##C#CD##BC##'
+@NC_011750.1-84/2
+GTTACCTGCCGTGAGTAAATTAAAATTGTATTGATTTAGGTCACTAAATACTTTAACCAGTAGAGGCACAGCGCACAGACAGATAAAAACTACAGAGTAC
++
+=C;F4CFF2GF:C#HJJJJAHJJGIH+#JJJ)J###FJJHG@IJCBI@AGEIEED@#FC#E@#BC5CI#=DED>CID;8#GEF@;=D@E#@@ABDFD(D'
+@NC_011750.1-82/2
+TCGAGGTAATGCCCCCCTGCCAGCAGTTTTTCGACCGGATCAATAAGGGTAACGTTGTGACCGCGCGCTTCTATTACGCCGGCCATAGTCGCGATCGACA
++
+:@?:FDD:<GF<DGB!BIG#GJJJJFE,C)HFFJIDF)GHI#J#F0#IJGHBGH?F)HGEI>J>)GFEH5>C7#DD>DB6>9CHHFA#C#CA@CDC:@3'
+@NC_011750.1-80/2
+ATCAGCCTGAATACGACTTGCGGCGATTCGGCGGGTTGACTCAGCGATATCGTCGTTGCATTCGATTTAATGCCCCACTGCCAGGAGTTTTACGTCCGGA
++
+=<C+FAD#A<HFAEEFAJCGI#IG!FI!#@I:EIBD#IFBJ?I3H#GJJJBH!#?#G##F?IIHE##EHDJFHEHCFCBEAFCA#DACDB5#>#!###C'
+@NC_011750.1-78/2
+CAGTGCGGGCTTTTTATTCGACCAACGGTAACGAGGTAACAACCATGCGAGAGTTGAAGTTCGGCGGTACATCAGTGGCACATTAAGAACGTTTTCAGCG
++
+CB;F=CFFHHHHHIC#EGIHCHAHI#J4A1H@JI<19:I3JHJGA?GHIB;##FHIGFJJHG)FCBHEDDGC5F#C#D4E#BH##CFC5EA#BCC##>CC
+@NC_011750.1-76/2
+TAGCAGCGTCTGAACTGGTTACATGCCGTGAGTAAATTAAATAGCTTTTGAGTTAGGTCACTGAACACTTTAAGCAAGATAGGGATAGAGCAGATAGAGT
++
+BB?4=FD#HGHDHJI2FG:)JG#?JH+I+#FIJIJ#IG*H1##!#I#D;?D#IGBG7EDAFJ#CF#D@FE#HE#HED#)I<D##>ADC!7EB###D#A#!
+@NC_011750.1-74/2
+ATTGCCCCAACAAACTAATGCCATGCAGGACATGTTTGATTTGGGCAAATACCTGATCGCCGGAAGTGTTTAGTTGAGCCAGCGTGAATCCCGTATGGGC
++
+C#BAF#DFF3GFBJG#IJJH@JCEJAJG?JJ0JGGHH#@1:JIFI9GF#F#ADDICHHJ!GI#EBF:#FD#IAGB###C#BDBH#5>EE:EB###AC>A?
+@NC_011750.1-72/2
+ACATTATCTCGCCACAGCAAATCAGCGCAGCGTTGATGCTATGGGGGCACTGCCCGAACAAACTACTGCCATACAGGACATGTTTTAATTGGGCAAATGC
++
+?C=DF!FFGHHHDJA#<CAGCJB?IJ?B;IGGHI)HIIGCH;!#4?#CGBIJB98#8DCC)JJHG#BCHIHC#GC<#DDD#CD?DFA#?D@CD>>B@D#5
+@NC_011750.1-70/2
+CTCGTTCCCTTGGGTCGAAAAAAAAACCCGCACTGTCAGGTGCGGGCTTTTTTCTGTATTTCCTATACGCTTGAGCCCGCACCATTACCTGTGCTAATGA
++
+BBBF4F#;CF<#FF)JI,BJ,9+:H#C<?I9#GJJIJJJ3D#<JFAI?D#7F<@IJA##GI=GC#E##C##I#AFDDDF#D#D!@ADDBF>?(#D>C#>'
+@NC_011750.1-68/2
+CACCTTCACCATTACCACAGCTAACGGTGCGGGCTGACGCGTACTTGAAAAACGGAAAAAAGCCCGTACCGGACAGTGCGGGCTTTTTTTTCGACTAGAG
++
+CCCD+FFFHH?BFA<E+EJJ!BJJCII)EI#CGJJHHHGG?IJI##4.D##DB!CHI4I9JJFDID#C(F#BCH5DH@D?BDEED1CC@@D>;?D###C'
+@NC_011750.1-66/2
+ATACGTTCGGCATCGCTGATATTGGGTATATCATCATGGACGCTGATGGTTGTTTCAATCACCGCGACCATGTGGATTGTGATTTTGGAGGGGGTAGAGA
++
+@::4FD#FFH>H+J+J@IJ+I1FEIIHG+##G3:I(HJJ#I9JI#JIBHHCAIJIFGC#HD#AF=#GIJF!DJHA#F#ACEFEDDC5@#9#B>B#CC#BC
+@NC_011750.1-64/2
+TGATTTTGGCGGTGGCAGAGAGGACGATGACCACCTGCCCCTGCCTGGCATTGGTTTCCCGAATTGCGGCAAGAGGCAGAAAATGTTGTAATTTTGCTAC
++
+BB:?F=D;AFHH#GIJIGJGAIJHJE!)G#1CH@IGF@IIIDEJJ-IGHI#IF#FDDFE#FGC<!#HCAD75#D#IFFCBCC?#CFB#A###DB<DC#3'
+@NC_011750.1-62/2
+TGGATTAAAAAAAGAGTGTCTGATAGCAGCTGCAGGATTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTAACTTAGGTCACTAAATGATTTAACCGA
++
+##CF=F;DG?BHFF;FHF?AI2BFCJEGJI<#I#J###IG>JEICG8J#D9HFF2JCGECDHC=H=AG=#?C#F=A@C?BHC+B#?AC#!#AC>D@C##'
+@NC_011750.1-60/2
+GTTACCTCGTTAGCTTTGGTCGAAAAAAAAGCCCGCACTGACAAGTGCGGGCTGTTTTCTGTGTTTCATGGACGCGAGAGCCCCCCCCGTGACCTGTGGT
++
+BC@DFDDF2H+F#<C:HHHFJG?FIJH1GII?HDIHIBGJ!HC#IH9D=IH.?#HJJ@#D#JHH=D@#HI#GC@G>##D>FCB#D##CA5#C#D<?;CA'
+@NC_011750.1-58/2
+CCGAAGTTCTGACGGGACTCGCCGATGACCAACTGGGATTCCCGCTGGGGTAACTTAAGACTTTCCGCGATTAGAAATTTGCCTAAGAGAGACATGTCAT
++
+C@CF:#FDFHHHHEJJ+IIJDHID+G##HICH*#FB2=IIJIDI#=H5!B#AJII#@I#JFDFGE##G?GC/CH#C#DD##DB#C9#!#4!CDC>>C@#'
+@NC_011750.1-56/2
+CCATTAGCGGCCAAGAAGCTTTAACCAATATCAGCGATGCCGAACGTATTTTAGCCCTACTTCTGAAGGGACTCGTCGCTGACACACCTGGATGGCCGCT
++
+@CC#+FCAFCHHH!EI#?#GJJ0#H9J2ECIJ?IJCF=GJG>GE>J9?9=G##J.I##JDDGBHC?#IDEG#HAC#@E@C##D##FE##DCAA##E<9DE
+@NC_011750.1-54/2
+GTTTTTTAAATCCTCGCCACCAGGTGGTTGGTGATTTTGGCGGGGGCAGAGAGGGCGGTGGCCACCTGCCCCTGCCTGGAACGGCTTTCCAGAATATCGG
++
+1@+F4AD#AAF##HJJIGJ<EGI#J#GI?JGB?G@EJHF9JJ?#G'I?HHC##?##BHIGG@JJJ;@HIH#HF:H>@DD#?##C@<CD#A@CD?CDC#BC
+@NC_011750.1-52/2
+GTGGCGATGATTGAAAGAACCATTAGCGGCCAGTATGCTTTACCCAAAAGCAGCGATGCCGAACGAATATTTGGCGAACTTCTTCCGGGAATCGCCGCAA
++
+@CCFFFD=DEHHCH<I#JGIIJJIIII)@G<JG#GGI#I9FCJIJ#G!J#GH#GEIB7JGH#D=8#H##C.DH#@F#JE##CF##@EBCD#>FCC#D@#'
+@NC_011750.1-50/2
+GAAAAAAAAGCCCGCACTGTCTGGTTATGGTTTTTTTCTGTGTTTCCTCGACGCGTCAGCCCGCACGGTTACCTGAGGTAATGGTGTTGGTCGTGGTTAC
++
+@=@FDDF2DFHH+GEJ2AJJD!JFG#!)FE#JGHJ>#ICG?JDBFI*G##DC#CJGDJIJ@IIJDG#DCD#FCC#!>9C@>#D@BD##CDE#CDD#A#D'
+@NC_011750.1-48/2
+TGCCAGGCAGGGGCAGGTGGCCACGGTCCTGTCTGCCCCCGCCAAACTCACCAACCGCCTGATGGCGATGAGTGAATAAACCATTATTGACTAGCACGCT
++
+BC@4DACDHHFF2+IC:?FHFJI,!CEHGI!DGEG)IJHDG#JI2G#BIEI=AHCB#I#FE#J#CD86BHD#ICE##EAI:=3C#C##@#C##B#@#<CA
+@NC_011750.1-46/2
+TGCCAGGCAGGGGCAGGTGGCCCCCGTCCTCTCAGCCCCCATCACAATCACCAACCACCTGGTGGCGAAGACTGATAAAACGATTAGCTGCCAGGATGAT
++
+@C@A1D4;H+DFB+GG?IJ=GI#GI+JGJGIFD#JGGJI>##HC#'JBJIE@GGICIIJIAG;HH#;>#ID#J3C#?@@-9#CEC?;@#:#B#@8DBB#C
+@NC_011750.1-44/2
+AATATCGACGGTAGAGTCGATGTACTGCCCCACTGCCAGCAGTTTTTCGACCGGATCGATAAATGTATCGTTGTGACCGCGCGCTTCTAGTACGCCGGAC
++
+CB1FFCFFFHFD<JE#JG+<#GGH#'JIJJFIHGIEJGEFGJJHI=HGIIHHBBCDDB#@AF'#)JC#CHD#FADCD@#@(#5C=C#D###>D8>E3D#D
+@NC_011750.1-42/2
+CAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGACAATATCACCAACTACCTGGTGGCGAAGATTGAAAAAACCATTAACGACCCGGATGCTTTG
++
+#C@FDD?FH:FFHIIF2;E+3III<#EIHIHHHJD/GH#GIG#E4IJAJ<B##9I9@>JJ#FFGD#H#EIE@BEFDCDJCH@D!CB#FD#EDDBB8B>>'
+@NC_011750.1-40/2
+TGGCGATCGACATTGTCTCACCCGGGCAAAGCAGCGCAGCCTTGTTGCTATCCGGGCACTGCTCTAACACCCTAATACGATGCCGGAACTGTTTAATTCG
++
+8C?=FADDHHH#DD#E:,E#E:#)CEEJ8I#@GBGFH0JD*HDF!EJ0G?4JD8#IGEHI;H#I#F=GH##JFCBF!>#CC#B#?CE##CD;?D#AB@#>
+@NC_011750.1-38/2
+TCTGCATTTGCCACTAATGTATCGCCGAACTTCATAACCCGCATGGTTGTTACCTTGATACCTTTGGTCGGAAGAAAAGCCCGCACTGTCAGGGGCGTTC
++
+B;CA40FF4GH>HHI!HCJGJ#:JHI7IJIFIJF##GJ!IGJJGGHG4JAGJCJJ#G#IGI?AIHCJ@AJ#JH#CBD#DD@?CD:ADFBCC?E!5C>##D
+@NC_011750.1-36/2
+CGATAACGGTAACGTTGTGACCGCGCGCTTCTAATATGCCGGACATAATGGCGGTGGACTTTTTCTCGCGCCGGCAATTGAGCGCAGCGTTGATGCTGTC
++
+@=@+=CF:FHDGF<HJGFCC?HJDCIFI?+1IBHJG#HIG?*#IBIII/#.BG#I!H=H!CIHHDG?D?##D1)@CH#@##CBDC;D;CA;#>#CDD#@'
+@NC_011750.1-34/2
+GGCAGGGGCAGGTGGCCATCGTCCTCTCTGCCCCCGCCAACATGACCAACCACCTGGTGGCGATGATTGAAAAAACCAATAGCACCCAGGATGCATTACT
++
+@@@FADDFHHHAH92FFJ!GECAEECJG##JHDAHIJ*GJ!<*!C?DI#D=EHGJ2JJHJJGGAJ=#HBEFBIHA<#F#:<@D#!D5ECFDCCB#CD#@'
+@NC_011750.1-32/2
+ACGGCGGGTGCACTTAGCAATATCGACGGTAGATTCGAGGTAAGGCCCCACTGCCAGCAGATTTTCGACCGGGTCGAGAACCGTAACGTTGTGGTAGCGC
++
+?BCF4;DDH<#3HG#HGHJ#>AGGHAE?DDII+GF?IJIG*JI#BIHICFHGIC6DHGH##DI(#>CG;7>A##C@F#(:D#EBA#I#DC8D##!#?>DC
+@NC_011750.1-30/2
+TTGACCCAATATCACCGATGCGCAACGGATTTTTTGCGAACATCTGACGGGACTCGCCGCGGCCCAACCGTGATCACCGCTCGCGCAACTGCAAGAATTC
++
+B@+D1F0DAEHFGD#HA3JJI##HIFI#IGGGJH!#G#EJG#A#DBIHEFC;GEJBJGCH'J<#E;#.@D#HD>##DDD#7#@EC;,CFC?#CC##!;?5
+@NC_011750.1-28/2
+TACTCGCATTGTTGTTACCTCGTTGCCTTTGGTCGTAAAAAAAGCCCGCATTGTAAGGTGCGGGCTTTGTGCTGTGTTTCCGGTACGCTTCATCGCGCAG
++
++CBFBDFDH#HHHEHHJJJIE<JJ#HDJHIHIGAI!IHEFH#1@FIJ@HI!#JI#JDDI#)DIHHDGD#(#F:4#EIH#CD#CCFCC>#@A9!<#DDD<'
+@NC_011750.1-26/2
+CACTGCCCGAACAATCAACTGCCATACAGAACATGTTCGATTTGGGCACATACCTGATCGACGAAAGCTTTCAGTTGCGCCAGCGGGAATCCCAGGTGAT
++
+BCCFFFAA#HHH+J+E#A#JJGICA#FC1#JJJIIII##IIJHJII>I#AF#IDC#FIEHIDFI;CF!DFF>DB&@+A)3DE4C;CDDA5B>D###CD#'
+@NC_011750.1-24/2
+AATTACAGAGTATACAACATCCATGAAACTCATTAGCACCACCAATACCACCACCATCACCATTACCACATGTAACGGAGCGGGCTGACGCTCCCAGAAA
++
+B@@F4CFFH+B2#+?JII?JJ,?<+IJ@J#GHH#GID>H*BJ?D!F9I9DF1FICHG;JF@D8JEGHJJB#=?@D?HG##=D;ECDC,FAD8##1CD#BD
+@NC_011750.1-22/2
+TCACCATTTCCACAGGTAAAGGTTCGGGCTGACGAGTACAGGAAACACAGTAAACGGCCCGCACCTGACAGTACGGGCCTTTTTTTCGACCATAAATAAC
++
+:@CAFEFB#HDAH2*;JIF#JGI#?IBIG#HIHG#B0IH:HJFG#GIJ9<!#IH##CDIJEEG##GC3D#A)#HF)BC#DE#DCEED8>C2D#E##CA>'
+@NC_011750.1-20/2
+CACCGTCCGCTCTGCCCCCGCCACAATCACCAACCACTTGGTGGCGATGATTGAAAAAATGATTAGCGGCCCAGATGCTTTACCCAACACAAGCGCTGCT
++
+@BCFF;FA+FHF,CEHJC+JGHD#FGIJGF1?1J9#)#D;GBHHH#<FBABIJIJDCHC!#E;>DCBECGH##CDFCH>H:DD6CDD#@##BC#D#C(D'
+@NC_011750.1-18/2
+GTAGATGCGAGGTAATGCCTCACTGCCAGCAGTTTTTCGACCGGATCGATAACGGTAACGTTAGGACCGCGCGCTTCTAGTTCGCTGGCCTCAATGGCGA
++
+@C+F4C!FHHHF#JCCHCJ!J0JHGC<#GIC:IE9JI:II9G9;EFG#IF#GHJB.?F:IBF###9#HBHDDBEGH:@I#J#DCH#D4D###C#9C><@D
+@NC_011750.1-16/2
+ACATTTTCTCGCCACGCCAAATCAGCGCAGCGTTGTTGCAATCCGGGCTCGGCCCCAACAAACTAAGGCCATGCAGGACATGTAATATTTGGGCAACTCC
++
+CC=FFFDFHHGH2JGJ#IHIE@HJJI#IFABF;G?#?II!HBJI@BHB#<#CEG@B>C#HHC;JJD#8<G9H##D@A>DBCDH#?9@CCB@>HC:E#:#@
+@NC_011750.1-14/2
+GGGCAGCGGCGAGTCCCGTCAGAAGTACAGCAAAAATATATCCAGGAGCGCTGATATTGGGTAAAGCACACTGGAAGCAAATGGGTTTTTAAAGCACCGC
++
+=C?DFF>DDHHH?JCIAII<GJ32+##J##HCJJJHH8##J#I#J#J#IG?;BECEECCFE#JC#J#E##E##A##CI#3BBAE#E>B:D#DD#3D#:A'
+@NC_011750.1-12/2
+GTTTCCTTGTTACCTTTGGTCGAAAAAAAAGCCCGCACTGTCAGGTGCGGGCCTTTTTCTGTGTTTCCTATTCGCGTCAGCTCGCACGGTGACCTGTGGT
++
+=@@#=F,!HHGHBI+J2?JIHI<IHJ2GCBEHJJH:GI:GCIFHEGDGIA?C#F0ID@@IGHCEG#H;H#F#F6F5E8ECC##CD3?#CD#+A?D#AC@4
+@NC_011750.1-10/2
+ATGCTTTACCCAATATCAGCGATGCCGAACGTATTCTTGCCGAACGTCTGATGGGACTGGCAGCTGCCCATCCGGGATTCGCGCTGGCGCCACCGATGAC
++
+BB@FF0=FHFHF?I@+J4:JJAI:JEIFEFJ@<@*#DCIDJGI#<#9*5CI#HH@H*##FF#IHA#IG@E#:4J?B#CC#!C<C;C<ADA#9B##E##C<
+@NC_011750.1-8/2
+CCCTGCCTGGCATTGCTTTCCGGAATATCGGCAGCACGCAGAAAACGTTCTGCCTTTGCTACTGATGCACCGACGAACTCCAACACTCGAATGGTTATTA
++
+C@CDA;DDDHHGHBADJAJ;?#GCACHHH<?GG#.J@IBHG#9=BEGBIDDJE#@ICJC#)GFHHHE#CJE##H=@?GD#>:#E;?CD>#DBD?5A#EBC
+@NC_011750.1-6/2
+TGCCCAACCGGGATTCCCGCTGGCGCATCTGAAAACTTTCGTAGATCAGGAGGTTGCCCAAAGTAAACATCTCGTGCATGGCATAAGGCTGTTGGGGCAG
++
+@1B4FDFF=CD?2I#IJF<<EFIGFFJ#JIGBJ<GIICGJHJ#IF*DBGGE##BGFIEGH>8##CDJ#HB#C=#>F=D#G@DHA#B#!#CC<DC@<#?A'
+@NC_011750.1-4/2
+TGGTTACCTGCCGTGAGCAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCACTATGGGCATAGCACACAGACAGATAAAAATCACAGACT
++
+?##D+FD;@H+<#HHEI#4IJA8HE9EJJ?G??HJCGCGI?HJB8FIJGJFF(I7G#GEJJ#;)G#D3C#JFEH#H@EEJDBCD;D@<>E;9#B@CC#!'
+@NC_011750.1-2/2
+TTTATTGCCTTAGGTCACTAAATACTTTAACCAATACATCCATAGCGCACAGACACATAAAAATTACAGAGTACACAACATCCATGAAATGCGATAGCAC
++
+8BCDFFD)HHHH>AIIJJJJE*J<JBJC?CEC#?J##B##@JIF0D>#A9JH@JJ#9JDD=JIA)FA:#C==?#FCA#DD9CBCBADD?#(C###9D?BD