Mercurial > repos > iuc > breseq

annotate test-data/gdtoolsout.html @ 0:f848a7f97332 draft

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"planemo upload commit fadaff2d55736bf8c580541d6089c83cd4106a1f"
author iuc
date Thu, 31 Oct 2019 19:40:40 -0400
parents
children 0d18a3ba2d1c
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1 <!DOCTYPE html
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2 PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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3 "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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4 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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5 <html>
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6 <head>
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7 <title>Mutation Comparison</title>
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8 <style type = "text/css">
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9 body {font-family: sans-serif; font-size: 11pt;}
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10 th {background-color: rgb(0,0,0); color: rgb(255,255,255);}
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11 table {background-color: rgb(1,0,0); color: rgb(0,0,0);}
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12 tr {background-color: rgb(255,255,255);}
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13 .mutation_in_codon {color:red; text-decoration : underline;}
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14 .snp_type_synonymous{color:green;}
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15 .snp_type_nonsynonymous{color:blue;}
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16 .snp_type_nonsense{color:red;}
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17 .mutation_header_row {background-color: rgb(0,130,0);}
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18 .read_alignment_header_row {background-color: rgb(255,0,0);}
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19 .missing_coverage_header_row {background-color: rgb(0,100,100);}
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20 .new_junction_header_row {background-color: rgb(0,0,155);}
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21 .copy_number_header_row {background-color: rgb(153,102,0);}
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22 .alternate_table_row_0 {background-color: rgb(255,255,255);}
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23 .alternate_table_row_1 {background-color: rgb(235,235,235);}
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24 .gray_table_row {background-color: rgb(230,230,245);}
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25 .polymorphism_table_row {background-color: rgb(160,255,160);}
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26 .highlight_table_row {background-color: rgb(192,255,255);}
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27 .reject_table_row {background-color: rgb(255,200,165);}
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28 .user_defined_table_row {background-color: rgb(255,255,0);}
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29 .information_table_row {background-color: rgb(200,255,255);}
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30 .junction_repeat {background-color: rgb(255,165,0)}
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31 .junction_gene {}
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32 .hidden { display: none; }
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33 .unhidden { display: block; }
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34
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35 </style>
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36 <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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37 <script type="text/javascript">
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38 function hideTog(divID) {
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39 var item = document.getElementById(divID);
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40 if (item) {
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41 item.className=(item.className=='hidden')?'unhidden':'hidden';
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42 }
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43 }
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44 function showTog(butID) {
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45 var button = document.getElementById(butID);
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46 if (button) {
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47 button.value=(button.value=='Show')?'Hide':'Show';
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48 }
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49 }
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50 </script>
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51
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52 </head>
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53 <body>
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54 <!--Output Html_Mutation_Table_String-->
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55 <table border="0" cellspacing="1" cellpadding="3">
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56 <tr><th colspan="5" align="left" class="mutation_header_row">Predicted mutations</th></tr><tr>
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57 <th>position</th>
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58 <th>mutation</th>
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59 <th>annotation</th>
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60 <th>gene</th>
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61 <th width="100%">description</th>
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62 </tr>
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63
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64 <!-- Item Lines -->
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65
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66 <!-- Print The Table Row -->
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67 <tr class="normal_table_row">
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68 <td align="right">41,405</td><!-- Position -->
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69 <td align="center">(GCG)<sub>2&rarr;5</sub></td><!-- Cell Mutation -->
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70 <td align="center">coding&nbsp;(325/873&nbsp;nt)</td>
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71 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
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72 <td align="left">NinC protein</td>
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73 </tr>
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74 <!-- End Table Row -->
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75
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76 <!-- Print The Table Row -->
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77 <tr class="normal_table_row">
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78 <td align="right">41,601</td><!-- Position -->
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79 <td align="center">(AAC)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
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80 <td align="center">coding&nbsp;(521&#8209;523/873&nbsp;nt)</td>
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81 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
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82 <td align="left">NinC protein</td>
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83 </tr>
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84 <!-- End Table Row -->
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85
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86 <!-- Print The Table Row -->
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87 <tr class="normal_table_row">
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88 <td align="right">41,716</td><!-- Position -->
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89 <td align="center">(T)<sub>5&rarr;9</sub></td><!-- Cell Mutation -->
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90 <td align="center">coding&nbsp;(636/873&nbsp;nt)</td>
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91 <td align="center"><i>NinC</i>&nbsp;&rarr;</td>
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92 <td align="left">NinC protein</td>
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93 </tr>
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94 <!-- End Table Row -->
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95
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96 <!-- Print The Table Row -->
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97 <tr class="normal_table_row">
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98 <td align="right">44,075</td><!-- Position -->
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99 <td align="center">(CAAA)<sub>2&rarr;1</sub></td><!-- Cell Mutation -->
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100 <td align="center">coding&nbsp;(190&#8209;193/624&nbsp;nt)</td>
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101 <td align="center"><i>Q</i>&nbsp;&rarr;</td>
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102 <td align="left">late gene regulator</td>
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103 </tr>
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104 <!-- End Table Row -->
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105
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106 <!-- Print The Table Row -->
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107 <tr class="normal_table_row">
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108 <td align="right">47,317</td><!-- Position -->
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109 <td align="center">N&rarr;T</td><!-- Cell Mutation -->
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110 <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font>&nbsp;(<font class="mutation_in_codon">N</font>TC&rarr;<font class="mutation_in_codon">A</font>TC)&nbsp;</span></td>
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111 <td align="center"><i>lambdap78</i>&nbsp;&larr;</td>
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112 <td align="left">putative envelope protein</td>
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113 </tr>
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114 <!-- End Table Row -->
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115 </table></body></html>