Mercurial > repos > iuc > brew3r_r

annotate test-data/input.gtf @ 2:05f8e9d1e8b8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 934f4b672e4f21e211a530281a973b61c20035c5
author iuc
date Thu, 27 Jun 2024 07:31:23 +0000
parents 928a52b5c938
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
1 ##gff-version 2
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
2 ##source-version rtracklayer 1.64.0
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
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3 ##date 2024-06-06
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
4 chr1 rtracklayer exon 5 10 . + . gene_id "gene11"; transcript_id "transcript11"; exon_id "exon11"; gene_name "gene11"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
5 chr1 rtracklayer exon 20 30 . + . gene_id "gene12"; transcript_id "transcript12"; exon_id "exon12"; gene_name "gene12"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
6 chr1 rtracklayer exon 105 110 . + . gene_id "gene21"; transcript_id "transcript21"; exon_id "exon21"; gene_name "gene21"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
7 chr1 rtracklayer exon 120 125 . + . gene_id "gene22"; transcript_id "transcript22"; exon_id "exon22"; gene_name "gene22"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
8 chr1 rtracklayer exon 205 210 . + . gene_id "gene31"; transcript_id "transcript31"; exon_id "exon31"; gene_name "gene31"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
9 chr1 rtracklayer exon 220 222 . + . gene_id "gene32"; transcript_id "transcript32"; exon_id "exon32"; gene_name "gene32"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
10 chr1 rtracklayer exon 305 310 . + . gene_id "gene41"; transcript_id "transcript41"; exon_id "exon41"; gene_name "gene41"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
11 chr1 rtracklayer exon 305 322 . + . gene_id "gene42"; transcript_id "transcript42"; exon_id "exon42"; gene_name "gene42"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
12 chr1 rtracklayer exon 405 410 . + . gene_id "gene51"; transcript_id "transcript51"; exon_id "exon51"; gene_name "gene51"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
13 chr1 rtracklayer exon 405 425 . + . gene_id "gene52"; transcript_id "transcript52"; exon_id "exon52"; gene_name "gene52"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
14 chr1 rtracklayer exon 505 510 . + . gene_id "gene61"; transcript_id "transcript61"; exon_id "exon61"; gene_name "gene61"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
15 chr1 rtracklayer exon 520 522 . + . gene_id "gene62"; transcript_id "transcript62"; exon_id "exon62"; gene_name "gene62"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
16 chr1 rtracklayer exon 601 610 . + . gene_id "gene71"; transcript_id "transcript71"; exon_id "exon71"; gene_name "gene71"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
17 chr1 rtracklayer exon 601 610 . + . gene_id "gene71"; transcript_id "transcript72"; exon_id "exon71"; gene_name "gene71"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
18 chr1 rtracklayer exon 630 640 . + . gene_id "gene71"; transcript_id "transcript72"; exon_id "exon72"; gene_name "gene71"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
19 chr1 rtracklayer exon 701 710 . + . gene_id "gene81"; transcript_id "transcript81"; exon_id "exon81"; gene_name "gene81"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
20 chr1 rtracklayer exon 701 710 . + . gene_id "gene82"; transcript_id "transcript82"; exon_id "exon82"; gene_name "gene82"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
21 chr1 rtracklayer exon 730 740 . + . gene_id "gene82"; transcript_id "transcript82"; exon_id "exon83"; gene_name "gene82"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
22 chr1 rtracklayer exon 801 808 . + . gene_id "gene1"; transcript_id "transcript91"; exon_id "exon91"; gene_name "gene1"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
23 chr1 rtracklayer exon 801 810 . + . gene_id "gene1"; transcript_id "transcript92"; exon_id "exon92"; gene_name "gene1"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
24 chr1 rtracklayer exon 830 840 . + . gene_id "gene1"; transcript_id "transcript92"; exon_id "exon93"; gene_name "gene1"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
25 chr1 rtracklayer exon 901 908 . + . gene_id "gene101"; transcript_id "transcript101"; exon_id "exon101"; gene_name "gene101"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
26 chr1 rtracklayer exon 901 910 . + . gene_id "gene102"; transcript_id "transcript102"; exon_id "exon102"; gene_name "gene102"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
27 chr1 rtracklayer exon 930 940 . + . gene_id "gene102"; transcript_id "transcript102"; exon_id "exon103"; gene_name "gene102"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
28 chr1 rtracklayer exon 1005 1010 . + . gene_id "gene111"; transcript_id "transcript111"; exon_id "exon111"; gene_name "Gm001"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
29 chr1 rtracklayer exon 1055 1070 . + . gene_id "gene112"; transcript_id "transcript112"; exon_id "exon112"; gene_name "gene112"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
30 chr1 rtracklayer exon 1100 1105 . + . gene_id "gene121"; transcript_id "transcript121"; exon_id "exon121"; gene_name "gene121"
928a52b5c938 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 3e3c47b732510a9ef0b2864b284aa14308e75ab0
iuc
parents:
diff changeset
31 chr1 rtracklayer exon 1110 1120 . - . gene_id "gene122"; transcript_id "transcript122"; exon_id "exon122"; gene_name "gene122"