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view test-data/input2.gtf @ 2:05f8e9d1e8b8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit 934f4b672e4f21e211a530281a973b61c20035c5
author iuc
date Thu, 27 Jun 2024 07:31:23 +0000
parents 3198f52bffaa
children
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chr12	HAVANA	gene	11208360	11208972	.	-	.	gene_id "ENSMUSG00000047002.2"; gene_type "protein_coding"; gene_name "Msgn1"; level 2; mgi_id "MGI:1860483"; havana_gene "OTTMUSG00000065713.1";
chr12	HAVANA	transcript	11208360	11208972	.	-	.	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	exon	11208360	11208972	.	-	.	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	CDS	11208385	11208948	.	-	0	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	start_codon	11208946	11208948	.	-	0	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	stop_codon	11208382	11208384	.	-	0	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	UTR	11208360	11208384	.	-	.	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";
chr12	HAVANA	UTR	11208949	11208972	.	-	.	gene_id "ENSMUSG00000047002.2"; transcript_id "ENSMUST00000049877.2"; gene_type "protein_coding"; gene_name "Msgn1"; transcript_type "protein_coding"; transcript_name "Msgn1-201"; exon_number 1; exon_id "ENSMUSE00000372682.2"; level 2; protein_id "ENSMUSP00000055001.1"; transcript_support_level "NA"; mgi_id "MGI:1860483"; tag "basic"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS25814.1"; havana_gene "OTTMUSG00000065713.1"; havana_transcript "OTTMUST00000159929.1";