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annotate test-data/test-db/busco_downloads/information/lineages_list.2021-12-14.txt @ 20:ea8146ee148f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
author iuc
date Mon, 18 Mar 2024 16:01:49 +0000
parents 94170eee0ad8
children
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2 ################################################
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3
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4 Datasets available to be used with BUSCO v4 and v5:
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5
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6 bacteria_odb10
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7 - acidobacteria_odb10
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8 - actinobacteria_phylum_odb10
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9 - actinobacteria_class_odb10
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10 - corynebacteriales_odb10
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11 - micrococcales_odb10
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12 - propionibacteriales_odb10
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13 - streptomycetales_odb10
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14 - streptosporangiales_odb10
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15 - coriobacteriia_odb10
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16 - coriobacteriales_odb10
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17 - aquificae_odb10
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18 - bacteroidetes-chlorobi_group_odb10
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19 - bacteroidetes_odb10
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20 - bacteroidia_odb10
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21 - bacteroidales_odb10
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22 - cytophagia_odb10
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23 - cytophagales_odb10
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24 - flavobacteriia_odb10
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25 - flavobacteriales_odb10
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26 - sphingobacteriia_odb10
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27 - chlorobi_odb10
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28 - chlamydiae_odb10
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29 - chloroflexi_odb10
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30 - cyanobacteria_odb10
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31 - chroococcales_odb10
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32 - nostocales_odb10
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33 - oscillatoriales_odb10
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34 - synechococcales_odb10
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35 - firmicutes_odb10
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36 - bacilli_odb10
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37 - bacillales_odb10
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38 - lactobacillales_odb10
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39 - clostridia_odb10
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40 - clostridiales_odb10
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41 - thermoanaerobacterales_odb10
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42 - selenomonadales_odb10
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43 - tissierellia_odb10
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44 - tissierellales_odb10
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45 - fusobacteria_odb10
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46 - fusobacteriales_odb10
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47 - planctomycetes_odb10
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48 - proteobacteria_odb10
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49 - alphaproteobacteria_odb10
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50 - rhizobiales_odb10
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51 - rhizobium-agrobacterium_group_odb10
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52 - rhodobacterales_odb10
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53 - rhodospirillales_odb10
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54 - rickettsiales_odb10
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55 - sphingomonadales_odb10
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56 - betaproteobacteria_odb10
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57 - burkholderiales_odb10
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58 - neisseriales_odb10
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59 - nitrosomonadales_odb10
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60 - delta-epsilon-subdivisions_odb10
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61 - deltaproteobacteria_odb10
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62 - desulfobacterales_odb10
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63 - desulfovibrionales_odb10
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64 - desulfuromonadales_odb10
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65 - epsilonproteobacteria_odb10
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66 - campylobacterales_odb10
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67 - gammaproteobacteria_odb10
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68 - alteromonadales_odb10
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69 - cellvibrionales_odb10
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70 - chromatiales_odb10
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71 - enterobacterales_odb10
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72 - legionellales_odb10
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73 - oceanospirillales_odb10
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74 - pasteurellales_odb10
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75 - pseudomonadales_odb10
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76 - thiotrichales_odb10
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77 - vibrionales_odb10
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78 - xanthomonadales_odb10
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79 - spirochaetes_odb10
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80 - spirochaetia_odb10
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81 - spirochaetales_odb10
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82 - synergistetes_odb10
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83 - tenericutes_odb10
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84 - mollicutes_odb10
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85 - entomoplasmatales_odb10
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86 - mycoplasmatales_odb10
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88 - verrucomicrobia_odb10
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89 archaea_odb10
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91 - thermoprotei_odb10
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92 - thermoproteales_odb10
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93 - sulfolobales_odb10
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94 - desulfurococcales_odb10
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95 - euryarchaeota_odb10
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96 - thermoplasmata_odb10
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97 - methanococcales_odb10
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98 - methanobacteria_odb10
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99 - methanomicrobia_odb10
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100 - methanomicrobiales_odb10
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101 - halobacteria_odb10
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102 - halobacteriales_odb10
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103 - natrialbales_odb10
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104 - haloferacales_odb10
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105 eukaryota_odb10
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106 - alveolata_odb10
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107 - apicomplexa_odb10
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108 - aconoidasida_odb10
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109 - plasmodium_odb10
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110 - coccidia_odb10
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111 - euglenozoa_odb10
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112 - fungi_odb10
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113 - ascomycota_odb10
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114 - dothideomycetes_odb10
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115 - capnodiales_odb10
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116 - pleosporales_odb10
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117 - eurotiomycetes_odb10
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118 - chaetothyriales_odb10
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119 - eurotiales_odb10
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120 - onygenales_odb10
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121 - leotiomycetes_odb10
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122 - helotiales_odb10
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123 - saccharomycetes_odb10
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124 - sordariomycetes_odb10
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125 - glomerellales_odb10
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126 - hypocreales_odb10
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127 - basidiomycota_odb10
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128 - agaricomycetes_odb10
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129 - agaricales_odb10
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130 - boletales_odb10
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131 - polyporales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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132 - tremellomycetes_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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133 - microsporidia_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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134 - mucoromycota_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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135 - mucorales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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136 - metazoa_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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137 - arthropoda_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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138 - arachnida_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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139 - insecta_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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140 - endopterygota_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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141 - diptera_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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142 - hymenoptera_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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143 - lepidoptera_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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144 - hemiptera_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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145 - mollusca_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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146 - nematoda_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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147 - vertebrata_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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148 - actinopterygii_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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149 - cyprinodontiformes_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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150 - tetrapoda_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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151 - mammalia_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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152 - eutheria_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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153 - euarchontoglires_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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154 - glires_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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155 - primates_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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156 - laurasiatheria_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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157 - carnivora_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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158 - cetartiodactyla_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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159 - sauropsida_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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160 - aves_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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161 - passeriformes_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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162 - stramenopiles_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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163 - viridiplantae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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164 - chlorophyta_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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165 - embryophyta_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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166 - liliopsida_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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167 - poales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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168 - eudicots_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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169 - brassicales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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170 - fabales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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171 - solanales_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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172 viruses (no root dataset)
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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173 - alphaherpesvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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174 - baculoviridae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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175 - rudiviridae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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176 - betaherpesvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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177 - herpesviridae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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178 - poxviridae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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179 - tevenvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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180 - aviadenovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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181 - enquatrovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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182 - teseptimavirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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183 - bclasvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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184 - fromanvirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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185 - skunavirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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186 - betabaculovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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187 - pahexavirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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188 - alphabaculovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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189 - tunavirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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190 - simplexvirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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191 - gammaherpesvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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192 - varicellovirus_odb10
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193 - cheoctovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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194 - guernseyvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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195 - tequatrovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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196 - chordopoxvirinae_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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197 - peduovirus_odb10
94170eee0ad8 planemo upload commit 09dff03131fb917a00cc291580ed7c4f38b266c9
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198 - iridoviridae_odb10
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199 - spounavirinae_odb10