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comparison busco.xml @ 17:e824f5d958d0 draft

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planemo upload commit 4b9a335c08b5d42b4297e641a28ff34b045810c3
author iuc
date Thu, 02 Mar 2023 17:02:45 +0000
parents bb935709506a
children 94170eee0ad8
comparison
equal deleted inserted replaced
16:bb935709506a 17:e824f5d958d0
171 <conditional name="use_augustus"> 171 <conditional name="use_augustus">
172 <param name="use_augustus_selector" value="yes" /> 172 <param name="use_augustus_selector" value="yes" />
173 </conditional> 173 </conditional>
174 </conditional> 174 </conditional>
175 <param name="outputs" value="short_summary,missing,gff" /> 175 <param name="outputs" value="short_summary,missing,gff" />
176 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> 176 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="6" />
177 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> 177 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" />
178 <output name="busco_gff"> 178 <output name="busco_gff">
179 <assert_contents> 179 <assert_contents>
180 <has_n_lines n="1"/> 180 <has_n_lines n="1"/>
181 <has_text text="##gff-version 3" /> 181 <has_text text="##gff-version 3" />
195 </conditional> 195 </conditional>
196 <conditional name="busco_mode"> 196 <conditional name="busco_mode">
197 <param name="mode" value="prot" /> 197 <param name="mode" value="prot" />
198 </conditional> 198 </conditional>
199 <param name="outputs" value="short_summary,missing,image,gff" /> 199 <param name="outputs" value="short_summary,missing,image,gff" />
200 <output name="busco_sum" file="proteome_results/short_summary" compare="diff" lines_diff="4" /> 200 <output name="busco_sum" file="proteome_results/short_summary" compare="diff" lines_diff="6" />
201 <output name="busco_table" file="proteome_results/full_table" compare="diff" lines_diff="4" /> 201 <output name="busco_table" file="proteome_results/full_table" compare="diff" lines_diff="4" />
202 <output name="busco_missing" file="proteome_results/missing_buscos_list" compare="diff" lines_diff="4" /> 202 <output name="busco_missing" file="proteome_results/missing_buscos_list" compare="diff" lines_diff="4" />
203 <output name="summary_image" file="proteome_results/summary.png" compare="sim_size" /> 203 <output name="summary_image" file="proteome_results/summary.png" compare="sim_size" />
204 <output name="busco_gff"> 204 <output name="busco_gff">
205 <assert_contents> 205 <assert_contents>
239 <param name="augustus_species" value="human" /> 239 <param name="augustus_species" value="human" />
240 </conditional> 240 </conditional>
241 </conditional> 241 </conditional>
242 </conditional> 242 </conditional>
243 <param name="outputs" value="short_summary,gff" /> 243 <param name="outputs" value="short_summary,gff" />
244 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> 244 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="6" />
245 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> 245 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" />
246 <output name="busco_gff"> 246 <output name="busco_gff">
247 <assert_contents> 247 <assert_contents>
248 <has_n_lines n="1"/> 248 <has_n_lines n="1"/>
249 <has_text text="##gff-version 3" /> 249 <has_text text="##gff-version 3" />
265 <param name="augustus_model" value="local.tar.gz" ftype="augustus" /> 265 <param name="augustus_model" value="local.tar.gz" ftype="augustus" />
266 </conditional> 266 </conditional>
267 </conditional> 267 </conditional>
268 </conditional> 268 </conditional>
269 <param name="outputs" value="short_summary,missing" /> 269 <param name="outputs" value="short_summary,missing" />
270 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="4" /> 270 <output name="busco_sum" file="genome_results/short_summary" compare="diff" lines_diff="6" />
271 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" /> 271 <output name="busco_table" file="genome_results/full_table" compare="diff" lines_diff="4" />
272 <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4" /> 272 <output name="busco_missing" file="genome_results/missing_buscos_list" compare="diff" lines_diff="4" />
273 </test> 273 </test>
274 <test expect_num_outputs="5"> 274 <test expect_num_outputs="5">
275 <param name="input" value="genome.fa" /> 275 <param name="input" value="genome.fa" />