Mercurial > repos > iuc > busco

comparison test-data/genome_results_metaeuk/short_summary @ 20:ea8146ee148f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
author iuc
date Mon, 18 Mar 2024 16:01:49 +0000
parents 2a5b8b9936bf
children 2babe6d5c561
comparison
equal deleted inserted replaced
19:2a5b8b9936bf 20:ea8146ee148f
1 # BUSCO version is: 5.5.0 1 # BUSCO version is: 5\.5\.0
2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) 2 # The lineage dataset is: arthropoda_odb10 \(Creation date: [0-9]{4}-[0-9]{2}-[0-9]{2}, number of genomes: 90, number of BUSCOs: 1013\)
3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp5_syjrgy/files/1/d/2/dataset_1d20a949-adce-4511-8cab-345d59a61a05.dat 3 # Summarized benchmarking in BUSCO notation for file [a-z0-9_\-/\.]+
4 # BUSCO was run in mode: euk_genome_met 4 # BUSCO was run in mode: euk_genome_met
5 # Gene predictor used: metaeuk 5 # Gene predictor used: metaeuk
6 6
7 ***** Results: ***** 7 \*\*\*\*\* Results: \*\*\*\*\*
8 8
9 C:0.2%[S:0.2%,D:0.0%],F:0.0%,M:99.8%,n:1013 9 C:0\.2%\[S:0\.2%,D:0\.0%\],F:0\.0%,M:99\.8%,n:1013
10 2 Complete BUSCOs (C) 10 2 Complete BUSCOs \(C\)
11 2 Complete and single-copy BUSCOs (S) 11 2 Complete and single-copy BUSCOs \(S\)
12 0 Complete and duplicated BUSCOs (D) 12 0 Complete and duplicated BUSCOs \(D\)
13 0 Fragmented BUSCOs (F) 13 0 Fragmented BUSCOs \(F\)
14 1011 Missing BUSCOs (M) 14 1011 Missing BUSCOs \(M\)
15 1013 Total BUSCO groups searched 15 1013 Total BUSCO groups searched
16 16
17 Assembly Statistics: 17 Assembly Statistics:
18 1 Number of scaffolds 18 1 Number of scaffolds
19 1 Number of contigs 19 1 Number of contigs
20 62370 Total length 20 62370 Total length
21 0.000% Percent gaps 21 0\.000% Percent gaps
22 62 KB Scaffold N50 22 62 KB Scaffold N50
23 62 KB Contigs N50 23 62 KB Contigs N50
24 24
25 25
26 Dependencies and versions: 26 Dependencies and versions:
27 hmmsearch: 3.1 27 hmmsearch: [0-9\.\+]+
28 bbtools: 39.01 28 bbtools: [0-9\.\+]+
29 metaeuk: 6.a5d39d9 29 metaeuk: [0-9a-z\.\+]+
30 busco: 5.5.0 30 busco: [0-9\.\+]+