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comparison test-data/genome_results/short_summary @ 21:2babe6d5c561 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 21578f94c8a18c7fd3c2e3aa36897768a4674d2a
author iuc
date Fri, 30 Aug 2024 15:19:56 +0000
parents ea8146ee148f
children
comparison
equal deleted inserted replaced
20:ea8146ee148f 21:2babe6d5c561
1 # BUSCO version is: 5\.5\.0 1 # BUSCO version is: 5.7.1
2 # The lineage dataset is: arthropoda_odb10 \(Creation date: [0-9]{4}-[0-9]{2}-[0-9]{2}, number of genomes: 90, number of BUSCOs: 1013\) 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2024-01-08, number of genomes: 90, number of BUSCOs: 1013)
3 # Summarized benchmarking in BUSCO notation for file [a-z0-9_\-/\.]+ 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpl5l1blpe/files/7/a/3/dataset_7a33f452-1064-4b4a-943f-b0efef6a4a4a.dat
4 # BUSCO was run in mode: euk_genome_aug 4 # BUSCO was run in mode: euk_genome_aug
5 # Gene predictor used: augustus 5 # Gene predictor used: augustus
6 6
7 \*\*\*\*\* Results: \*\*\*\*\* 7 ***** Results: *****
8 8
9 C:0\.1%\[S:0\.1%,D:0\.0%\],F:0\.0%,M:99\.9%,n:1013 9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
10 1 Complete BUSCOs \(C\) 10 1 Complete BUSCOs (C)
11 1 Complete and single-copy BUSCOs \(S\) 11 1 Complete and single-copy BUSCOs (S)
12 0 Complete and duplicated BUSCOs \(D\) 12 0 Complete and duplicated BUSCOs (D)
13 0 Fragmented BUSCOs \(F\) 13 0 Fragmented BUSCOs (F)
14 1012 Missing BUSCOs \(M\) 14 1012 Missing BUSCOs (M)
15 1013 Total BUSCO groups searched 15 1013 Total BUSCO groups searched
16 16
17 Assembly Statistics: 17 Assembly Statistics:
18 1 Number of scaffolds 18 1 Number of scaffolds
19 1 Number of contigs 19 1 Number of contigs
20 62370 Total length 20 62370 Total length
21 0\.000% Percent gaps 21 0.000% Percent gaps
22 62 KB Scaffold N50 22 62 KB Scaffold N50
23 62 KB Contigs N50 23 62 KB Contigs N50
24 24
25 25
26 Dependencies and versions: 26 Dependencies and versions:
27 hmmsearch: [0-9\.\+]+ 27 hmmsearch: 3.1
28 bbtools: [0-9\.\+]+ 28 bbtools: 39.06
29 makeblastdb: [0-9\.\+]+ 29 makeblastdb: 2.15.0+
30 tblastn: [0-9\.\+]+ 30 tblastn: 2.15.0+
31 augustus: [0-9\.\+]+ 31 augustus: 3.5.0
32 gff2gbSmallDNA\.pl: None 32 gff2gbSmallDNA.pl: None
33 new_species\.pl: None 33 new_species.pl: None
34 etraining: None 34 etraining: None
35 busco: [0-9\.\+]+ 35 python: sys.version_info(major=3, minor=9, micro=19, releaselevel='final', serial=0)
36 busco: 5.7.1