Mercurial > repos > iuc > busco

changeset 6:1e62c28ba91d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 768639889e24aecd31d85d37d6f0bba00ac2a486"
author iuc
date Wed, 04 Dec 2019 13:45:35 -0500
parents 1440ae06552f
children 4048d82f0c88
files busco.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/busco.xml	Mon May 13 09:17:19 2019 -0400
+++ b/busco.xml	Wed Dec 04 13:45:35 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="busco" name="Busco" version="@TOOL_VERSION@+galaxy1">
+<tool id="busco" name="Busco" profile="18.01" version="@TOOL_VERSION@+galaxy2">
     <description>assess genome assembly and annotation completeness</description>
     <macros>
         <token name="@TOOL_VERSION@">3.0.2</token>
@@ -7,6 +7,7 @@
         <requirement type="package" version="@TOOL_VERSION@">busco</requirement>
         <requirement type="package" version="3.5.1">r-base</requirement>
         <requirement type="package" version="3.3.2">augustus</requirement>
+        <requirement type="package" version="1.29">tar</requirement>
     </requirements>
     <command><![CDATA[
 export BUSCO_CONFIG_FILE='busco_config.ini' &&
@@ -17,7 +18,7 @@
 #if $adv.aug_prediction.augustus_mode == 'history':
     ## Using an augustus model from history, we need to unzip it and let augustus find it
     mkdir -p 'augustus_dir/species/' &&
-    tar -C 'augustus_dir/species/' -xzvf '${adv.aug_prediction.augustus_model}' > /dev/null &&
+    tar -C 'augustus_dir/species/' -xzf '${adv.aug_prediction.augustus_model}' &&
 #end if
 
 run_BUSCO.py