Mercurial > repos > iuc > bwa_mem2

diff bwa-mem2.xml @ 2:b4a22d90cce9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit 563c0931e9fc14b0d6e8a7d64ad042a483ec9bb4"
author iuc
date Wed, 24 Nov 2021 21:29:45 +0000
parents 82217dccdbcf
children bfaa0d22c2e4
line wrap: on
line diff
--- a/bwa-mem2.xml	Sat Oct 16 08:33:03 2021 +0000
+++ b/bwa-mem2.xml	Wed Nov 24 21:29:45 2021 +0000
@@ -5,8 +5,8 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="xrefs"/>
     <expand macro="stdio"/>
-    <expand macro="xrefs"/>
     <command><![CDATA[
 @pipefail@
 @set_reference_fasta_filename@
@@ -306,7 +306,6 @@
         <test>
             <param name="reference_source_selector" value="history" />
             <param name="ref_file" ftype="fasta" value="bwa-mem-mt-genome.fa"/>
-            <param name="index_a" value="is"/>
             <param name="fastq_input_selector" value="paired"/>
             <param name="fastq_input1" ftype="fastqsanger" value="bwa-mem-fastq1.fq"/>
             <param name="fastq_input2" ftype="fastqsanger" value="bwa-mem-fastq2.fq"/>