# HG changeset patch
# User iuc
# Date 1743177065 0
# Node ID d459a463cb73fce21398bfced4f26ab2452688f4
# Parent  fea76fc17330b5d41b82125925a4dbbf86f172fb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit 05dbd4644d6c63d6404d1c79ba1d0b6000807ca5

diff -r fea76fc17330 -r d459a463cb73 bwa-mem2.xml
--- a/bwa-mem2.xml	Fri Mar 28 08:29:39 2025 +0000
+++ b/bwa-mem2.xml	Fri Mar 28 15:51:05 2025 +0000
@@ -116,9 +116,9 @@
 #end if
 
 #if str( $output_sort ) == "coordinate":
-        | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output'
+        | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output'
 #elif str( $output_sort ) == "name":
-        | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output'
+        | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output'
 #else
         | samtools view -@ \${GALAXY_SLOTS:-2} -bS - -o '$bam_output'
 #end if
diff -r fea76fc17330 -r d459a463cb73 macros.xml
--- a/macros.xml	Fri Mar 28 08:29:39 2025 +0000
+++ b/macros.xml	Fri Mar 28 15:51:05 2025 +0000
@@ -2,7 +2,7 @@
     <import>read_group_macros.xml</import>
 
     <token name="@TOOL_VERSION@">2.2.1</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <token name="@PROFILE_VERSION@">20.01</token>
 
     <xml name="xrefs">