Mercurial > repos > iuc > bwameth

annotate tool-data/bwameth_indexes.loc.sample @ 6:b4e6819b25ef draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwameth commit 6d44811a45b4f6fded1ec72450ed300318095ce4"
author iuc
date Tue, 13 Jul 2021 13:56:29 +0000
parents 404fae08ea31
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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1 # This is a sample file distributed with Galaxy that is used to define a
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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2 # list of bwa-meth indices, using three columns tab separated:
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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3 #
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404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
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4 # <unique_build_id> <dbkey> <display_name> <genome_fasta_file_path>
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f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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5 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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6 # An index can be created with the following command:
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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7 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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8 # bwameth.py index /some/path/genome.fa
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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9 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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10 # "/some/path/genome.fa" would then be the last column in the line
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404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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11 # If this were for the mm10 mouse genome, the resulting entry would look like:
404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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12 #
404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
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13 #mm9 mm9 Mouse (mm9) /some/path/genome.fa
404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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14 #
404fae08ea31 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
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15 #