Mercurial > repos > iuc > bwameth

annotate tool-data/bwameth_indexes.loc.sample @ 0:f7094efef903 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
author iuc
date Wed, 14 Sep 2016 16:55:47 -0400
parents
children 404fae08ea31
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
1 # This is a sample file distributed with Galaxy that is used to define a
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
2 # list of bwa-meth indices, using three columns tab separated:
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
3 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
4 # bwameth_index_id\tSome description text\t/path/to/genome.fasta
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
5 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
6 # An index can be created with the following command:
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
7 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
8 # bwameth.py index /some/path/genome.fa
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
9 #
f7094efef903 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
parents:
diff changeset
10 # "/some/path/genome.fa" would then be the last column in the line