Mercurial > repos > iuc > bwameth

comparison bwameth.xml @ 1:404fae08ea31 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
author iuc
date Wed, 21 Dec 2016 17:49:54 -0500
parents f7094efef903
children 2e4674c16615
comparison
equal deleted inserted replaced
0:f7094efef903 1:404fae08ea31
1 <tool id="bwameth" name="bwameth" version="0.2.0"> 1 <tool id="bwameth" name="bwameth" version="0.2.0.2">
2 <description>Fast and accurate aligner of BS-Seq reads.</description> 2 <description>Fast and accurate aligner of BS-Seq reads.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2">samtools</requirement> 4 <requirement type="package" version="1.2">samtools</requirement>
5 <requirement type="package" version="0.2.0">bwameth</requirement> 5 <requirement type="package" version="0.2.0">bwameth</requirement>
6 </requirements> 6 </requirements>
39 <param name="source" type="select" label="Select a genome reference from your history or a built-in index?"> 39 <param name="source" type="select" label="Select a genome reference from your history or a built-in index?">
40 <option value="history" selected="True">Use one from the history</option> 40 <option value="history" selected="True">Use one from the history</option>
41 <option value="indexed">Use a built-in index</option> 41 <option value="indexed">Use a built-in index</option>
42 </param> 42 </param>
43 <when value="history"> 43 <when value="history">
44 <param name="reference" type="data" format="fasta" metadata_name="dbkey" label="Select a genome" help="in FASTA format" /> 44 <param name="reference" type="data" format="fasta" label="Select a genome" help="in FASTA format" />
45 </when> 45 </when>
46 <when value="indexed"> 46 <when value="indexed">
47 <param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact your Galaxy admin"> 47 <param name="index" type="select" label="Select a reference genome" help="If your genome of interest is not listed, contact your Galaxy admin">
48 <options from_data_table="bwameth_indexes"> 48 <options from_data_table="bwameth_indexes">
49 <filter type="sort_by" column="2"/> 49 <filter type="sort_by" column="2"/>