# HG changeset patch
# User iuc
# Date 1489306282 14400
# Node ID 2e4674c166154eb8dbbf73065205fc18159c5dfc
# Parent  404fae08ea3126b69e19015f914d023d2ccb09cf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit 10747839851e862ba0200061e1c99d68e009fb18

diff -r 404fae08ea31 -r 2e4674c16615 bwameth.xml
--- a/bwameth.xml	Wed Dec 21 17:49:54 2016 -0500
+++ b/bwameth.xml	Sun Mar 12 04:11:22 2017 -0400
@@ -31,7 +31,7 @@
     #else:
         $single_or_paired.input_mate1.forward $single_or_paired.input_mate1.reverse
     #end if
-    | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -o output.bam -
+    | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -T tmp -O bam -o output.bam -
 ]]>
     </command>
     <inputs>