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diff charts.xml @ 0:a87a3773d8ed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ commit 87080d49913cfd40a77eda7e5834ac9c4bc30b0b
author iuc
date Fri, 09 Mar 2018 08:23:08 -0500
parents
children 344ac3ca7557
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/charts.xml	Fri Mar 09 08:23:08 2018 -0500
@@ -0,0 +1,90 @@
+<tool id="charts" name="Charts" version="1.0.1" hidden="true">
+    <description>wrapper for R</description>
+    <requirements>
+        <requirement type="package" version="1.20.0">r-getopt</requirement>
+        <requirement type="package" version="1.2-12">r-matrix</requirement>
+    </requirements>
+    <command detect_errors="aggressive">
+<![CDATA[
+        Rscript '$__tool_directory__/charts.r'
+            -w '$__tool_directory__/'
+            -m ${module}
+            -i '${input}'
+            -c '${columns}'
+            -s '${settings}'
+            -o '${output}'
+]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" label="Input dataset" format="tabular" />
+        <param name="module" type="select" label="R-script">
+            <option value="boxplot">boxplot</option>
+            <option value="heatmap">heatmap</option>
+            <option value="histogram">histogram</option>
+            <option value="histogramdiscrete">histogramdiscrete</option>
+        </param>
+        <param name="columns" type="text" area="true" label="Columns string (i.e key1: column, key2: column)" value=""/>
+        <param name="settings" type="text" area="true" label="Options string (i.e key1: value, key2: value)" value=""/>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="tabular.txt" />
+            <param name="module" value="histogram" />
+            <param name="columns" value="key1: 2" />
+            <param name="settings" value="" />
+            <output name="output" file="histogram.000.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular.txt" />
+            <param name="module" value="histogram" />
+            <param name="columns" value="key1: 2, key2: 3, key3: 4" />
+            <param name="settings" value="" />
+            <output name="output" file="histogram.001.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular.txt" />
+            <param name="module" value="histogram" />
+            <param name="columns" value="key1: 6" />
+            <param name="settings" value="" />
+            <output name="output" file="histogram.002.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular_single.txt" />
+            <param name="module" value="histogram" />
+            <param name="columns" value="key1: 1" />
+            <param name="settings" value="" />
+            <output name="output" file="histogram.003.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular.txt" />
+            <param name="module" value="boxplot" />
+            <param name="columns" value="key1: 2" />
+            <param name="settings" value="" />
+            <output name="output" file="boxplot.000.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular.txt" />
+            <param name="module" value="boxplot" />
+            <param name="columns" value="key1: 2, key2: 3, key3: 4" />
+            <param name="settings" value="" />
+            <output name="output" file="boxplot.001.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular_matrix.txt" />
+            <param name="module" value="histogramdiscrete" />
+            <param name="columns" value="key1: 1, key2: 2, key3: 3" />
+            <param name="settings" value="" />
+            <output name="output" file="histogramdiscrete.000.txt" lines_diff="2"/>
+        </test>
+        <test>
+            <param name="input" value="tabular_matrix.txt" ftype="tabular" />
+            <param name="module" value="heatmap" />
+            <param name="columns" value="key1: 1, key2: 2, key3: 3" />
+            <param name="settings" value="" />
+            <output name="output" file="heatmap.000.txt" lines_diff="2"/>
+        </test>
+    </tests>
+</tool>