Mercurial > repos > iuc > checkm2_build_database
changeset 3:ef05a2314ae0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_checkm2 commit 3e15f64954fb060e11abfe1a6857c21f4032ad9c
| author | iuc |
|---|---|
| date | Mon, 06 Oct 2025 16:41:44 +0000 |
| parents | df2f47a0e57a |
| children | |
| files | data_manager/checkm2_datamanager.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/checkm2_datamanager.xml Wed Feb 19 13:53:53 2025 +0000 +++ b/data_manager/checkm2_datamanager.xml Mon Oct 06 16:41:44 2025 +0000 @@ -2,8 +2,8 @@ <description>database builder</description> <macros> <!-- on update run a local test setting `test` to something else than "true" --> - <token name="@TOOL_VERSION@">1.0.2</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@TOOL_VERSION@">1.1.0</token> + <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">23.1</token> </macros> <requirements> @@ -13,8 +13,7 @@ <command detect_errors="exit_code"><![CDATA[ mkdir -p '$out_file.extra_files_path' && #if $test != "true" - wget 'https://zenodo.org/records/5571251/files/checkm2_database.tar.gz' && - tar -xf 'checkm2_database.tar.gz' -C '$out_file.extra_files_path' && + checkm2 database --download --no_write_json_db --path '$out_file.extra_files_path'/ && mv '$out_file.extra_files_path'/CheckM2_database/uniref100.KO.1.dmnd '$out_file.extra_files_path' && #else touch '$out_file.extra_files_path'/uniref100.KO.1.dmnd &&