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annotate tool-data/class.loc.sample @ 2:bcb8dc01f296 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 3ae2bd72f789518e95ef65b97e0e5ac90165e113
author iuc
date Mon, 02 Sep 2024 13:50:29 +0000
parents 7ccea589e8b7
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7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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1 # File generated by format_taxon_list.py script
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2 # taxon description
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3 Acidobacteriia Acidobacteriia (10 genomes, 572 marker genes, 395 marker sets)
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4 Aciduliprofundum Aciduliprofundum (2 genomes, 763 marker genes, 130 marker sets)
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5 Actinobacteria Actinobacteria (729 genomes, 205 marker genes, 119 marker sets)
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6 Alphaproteobacteria Alphaproteobacteria (648 genomes, 225 marker genes, 148 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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7 Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets)
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8 Archaeoglobi Archaeoglobi (5 genomes, 619 marker genes, 392 marker sets)
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9 Bacilli Bacilli (821 genomes, 250 marker genes, 136 marker sets)
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10 Bacteroidetes Order II. Incertae sedis Bacteroidetes Order II. Incertae sedis (5 genomes, 801 marker genes, 466 marker sets)
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11 Bacteroidia Bacteroidia (211 genomes, 401 marker genes, 266 marker sets)
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12 Betaproteobacteria Betaproteobacteria (322 genomes, 387 marker genes, 234 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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13 Chlamydiia Chlamydiia (64 genomes, 455 marker genes, 185 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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14 Chlorobia Chlorobia (12 genomes, 612 marker genes, 333 marker sets)
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15 Chloroflexi Chloroflexi (9 genomes, 452 marker genes, 315 marker sets)
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16 Chroococcales Chroococcales (55 genomes, 490 marker genes, 378 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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17 Clostridia Clostridia (446 genomes, 196 marker genes, 110 marker sets)
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18 Cytophagia Cytophagia (48 genomes, 438 marker genes, 328 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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19 Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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20 Dehalococcoidetes Dehalococcoidetes (5 genomes, 755 marker genes, 54 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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21 Deinococci Deinococci (40 genomes, 528 marker genes, 359 marker sets)
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22 Deltaproteobacteria Deltaproteobacteria (93 genomes, 197 marker genes, 125 marker sets)
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23 Dictyoglomia Dictyoglomia (2 genomes, 1060 marker genes, 103 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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24 Epsilonproteobacteria Epsilonproteobacteria (111 genomes, 445 marker genes, 271 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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25 Erysipelotrichi Erysipelotrichi (18 genomes, 301 marker genes, 159 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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26 Flavobacteriia Flavobacteriia (126 genomes, 321 marker genes, 202 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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27 Fusobacteriia Fusobacteriia (32 genomes, 289 marker genes, 159 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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28 Gammaproteobacteria Gammaproteobacteria (1167 genomes, 280 marker genes, 178 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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29 Halobacteria Halobacteria (59 genomes, 367 marker genes, 241 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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30 Holophagae Holophagae (2 genomes, 883 marker genes, 459 marker sets)
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31 Ignavibacteria Ignavibacteria (2 genomes, 1003 marker genes, 383 marker sets)
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32 Methanobacteria Methanobacteria (12 genomes, 513 marker genes, 264 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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33 Methanococci Methanococci (16 genomes, 610 marker genes, 439 marker sets)
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34 Methanomicrobia Methanomicrobia (29 genomes, 248 marker genes, 165 marker sets)
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35 Mollicutes Mollicutes (119 genomes, 177 marker genes, 105 marker sets)
7ccea589e8b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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36 Negativicutes Negativicutes (64 genomes, 334 marker genes, 167 marker sets)
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37 Nitrosopumilales Nitrosopumilales (2 genomes, 714 marker genes, 109 marker sets)
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38 Nitrospira Nitrospira (4 genomes, 676 marker genes, 379 marker sets)
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39 Nostocales Nostocales (18 genomes, 732 marker genes, 508 marker sets)
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40 Opitutae Opitutae (4 genomes, 676 marker genes, 427 marker sets)
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41 Oscillatoriales Oscillatoriales (25 genomes, 545 marker genes, 415 marker sets)
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42 Planctomycetia Planctomycetia (11 genomes, 360 marker genes, 256 marker sets)
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43 Pleurocapsales Pleurocapsales (6 genomes, 840 marker genes, 624 marker sets)
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44 Prochlorales Prochlorales (18 genomes, 806 marker genes, 240 marker sets)
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45 Solirubrobacterales Solirubrobacterales (2 genomes, 995 marker genes, 398 marker sets)
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46 Sphingobacteriia Sphingobacteriia (27 genomes, 334 marker genes, 233 marker sets)
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47 Spirochaetia Spirochaetia (71 genomes, 218 marker genes, 127 marker sets)
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48 Stigonematales Stigonematales (5 genomes, 1007 marker genes, 576 marker sets)
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49 Synergistia Synergistia (13 genomes, 452 marker genes, 160 marker sets)
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50 Thermococci Thermococci (16 genomes, 500 marker genes, 315 marker sets)
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51 Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets)
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52 Thermomicrobia Thermomicrobia (2 genomes, 933 marker genes, 336 marker sets)
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53 Thermoplasmata Thermoplasmata (4 genomes, 563 marker genes, 310 marker sets)
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54 Thermoprotei Thermoprotei (54 genomes, 217 marker genes, 168 marker sets)
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55 Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets)
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56 Verrucomicrobiae Verrucomicrobiae (7 genomes, 403 marker genes, 284 marker sets)
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57 Zetaproteobacteria Zetaproteobacteria (2 genomes, 1329 marker genes, 184 marker sets)