checkm_analyze: test-data/bin_stats

comparison test-data/bin_stats_ext.tsv @ 0:7ccea589e8b7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27

author	iuc
date	Fri, 29 Jul 2022 20:31:27 +0000
parents
children

comparison

equal deleted inserted replaced

-1:000000000000	0:7ccea589e8b7
	1 637000110 {'marker lineage': 'k__Bacteria', '# genomes': 5449, '# markers': 104, '# marker sets': 58, '0': 89, '1': 15, '2': 0, '3': 0, '4': 0, '5+': 0, 'Completeness': 24.137931034482758, 'Contamination': 0.0, 'GC': 0.5140727607039663, 'GC std': 0.0, 'Genome size': 1065960, '# ambiguous bases': 0, '# scaffolds': 1, '# contigs': 1, 'Longest scaffold': 1065960, 'Longest contig': 1065960, 'N50 (scaffolds)': 1065960, 'N50 (contigs)': 1065960, 'Mean scaffold length': 1065960.0, 'Mean contig length': 1065960.0, 'Coding density': 0.8805077113587751, 'Translation table': 11, '# predicted genes': 972, 'GCN0': ['PF04983', 'PF00623', 'PF01509', 'TIGR03263', 'PF00861', 'PF01632', 'PF00281', 'PF04561', 'PF00238', 'PF06421', 'PF03484', 'PF04997', 'PF01196', 'PF02367', 'PF01195', 'PF01000', 'PF11987', 'PF00687', 'PF01245', 'PF00831', 'PF04998', 'TIGR00019', 'PF00380', 'PF04563', 'PF00189', 'TIGR00922', 'PF01409', 'PF01193', 'PF05000', 'TIGR00855', 'PF05491', 'PF00673', 'TIGR00810', 'TIGR00329', 'TIGR03723', 'TIGR00250', 'PF08529', 'PF00203', 'PF01668', 'TIGR01079', 'PF01250', 'PF10385', 'PF00410', 'PF00466', 'PF00366', 'PF06071', 'PF00181', 'PF02033', 'TIGR03594', 'PF00338', 'TIGR00084', 'PF04560', 'PF00297', 'PF00333', 'PF01281', 'PF02912', 'PF00252', 'PF00416', 'PF00828', 'PF03948', 'PF03947', 'PF08459', 'PF00573', 'PF00886', 'PF03946', 'PF01746', 'PF00276', 'PF00347', 'PF01016', 'PF00177', 'PF00312', 'PF00411', 'TIGR00460', 'PF00237', 'PF00562', 'TIGR00344', 'TIGR00459', 'PF00164', 'PF00298', 'PF00162', 'PF00453', 'PF01018', 'PF02978', 'TIGR00967', 'PF03719', 'PF00572', 'PF13184', 'PF04565', 'PF00829'], 'GCN1': ['TIGR02432', 'TIGR02075', 'PF00318', 'PF13603', 'TIGR00755', 'PF01765', 'PF01795', 'PF12344', 'PF01649', 'PF01121', 'PF02130', 'TIGR00392', 'TIGR00615', 'PF00889', 'PF05697'], 'GCN2': [], 'GCN3': [], 'GCN4': [], 'GCN5+': []}

1 637000110 {'marker lineage': 'k__Bacteria', '# genomes': 5449, '# markers': 104, '# marker sets': 58, '0': 89, '1': 15, '2': 0, '3': 0, '4': 0, '5+': 0, 'Completeness': 24.137931034482758, 'Contamination': 0.0, 'GC': 0.5140727607039663, 'GC std': 0.0, 'Genome size': 1065960, '# ambiguous bases': 0, '# scaffolds': 1, '# contigs': 1, 'Longest scaffold': 1065960, 'Longest contig': 1065960, 'N50 (scaffolds)': 1065960, 'N50 (contigs)': 1065960, 'Mean scaffold length': 1065960.0, 'Mean contig length': 1065960.0, 'Coding density': 0.8805077113587751, 'Translation table': 11, '# predicted genes': 972, 'GCN0': ['PF04983', 'PF00623', 'PF01509', 'TIGR03263', 'PF00861', 'PF01632', 'PF00281', 'PF04561', 'PF00238', 'PF06421', 'PF03484', 'PF04997', 'PF01196', 'PF02367', 'PF01195', 'PF01000', 'PF11987', 'PF00687', 'PF01245', 'PF00831', 'PF04998', 'TIGR00019', 'PF00380', 'PF04563', 'PF00189', 'TIGR00922', 'PF01409', 'PF01193', 'PF05000', 'TIGR00855', 'PF05491', 'PF00673', 'TIGR00810', 'TIGR00329', 'TIGR03723', 'TIGR00250', 'PF08529', 'PF00203', 'PF01668', 'TIGR01079', 'PF01250', 'PF10385', 'PF00410', 'PF00466', 'PF00366', 'PF06071', 'PF00181', 'PF02033', 'TIGR03594', 'PF00338', 'TIGR00084', 'PF04560', 'PF00297', 'PF00333', 'PF01281', 'PF02912', 'PF00252', 'PF00416', 'PF00828', 'PF03948', 'PF03947', 'PF08459', 'PF00573', 'PF00886', 'PF03946', 'PF01746', 'PF00276', 'PF00347', 'PF01016', 'PF00177', 'PF00312', 'PF00411', 'TIGR00460', 'PF00237', 'PF00562', 'TIGR00344', 'TIGR00459', 'PF00164', 'PF00298', 'PF00162', 'PF00453', 'PF01018', 'PF02978', 'TIGR00967', 'PF03719', 'PF00572', 'PF13184', 'PF04565', 'PF00829'], 'GCN1': ['TIGR02432', 'TIGR02075', 'PF00318', 'PF13603', 'TIGR00755', 'PF01765', 'PF01795', 'PF12344', 'PF01649', 'PF01121', 'PF02130', 'TIGR00392', 'TIGR00615', 'PF00889', 'PF05697'], 'GCN2': [], 'GCN3': [], 'GCN4': [], 'GCN5+': []}

Mercurial > repos > iuc > checkm_analyze

comparison test-data/bin_stats_ext.tsv @ 0:7ccea589e8b7 draft